Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59550 268 / 1e-86 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G39720 254 / 2e-81 RHC2A RING-H2 finger C2A (.1) AT3G46620 253 / 3e-81 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 132 / 2e-35 RING/U-box superfamily protein (.1.2.3) AT2G40830 119 / 2e-30 RHC1A RING-H2 finger C1A (.1.2.3) AT3G19950 118 / 3e-30 RING/U-box superfamily protein (.1) AT3G13430 107 / 1e-26 RING/U-box superfamily protein (.1.2.3) AT3G10815 103 / 4e-26 RING/U-box superfamily protein (.1) AT1G55530 106 / 7e-26 RING/U-box superfamily protein (.1) AT5G01980 106 / 3e-25 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040278 [exp] 411 / 3e-145 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10024372 [exp] 206 / 2e-63 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 201 / 3e-62 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10000023 [exp] 182 / 7e-56 AT5G59550 159 / 5e-47 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10013235 [exp] 133 / 5e-36 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 133 / 5e-36 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 122 / 2e-32 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10010856 [exp] 122 / 5e-30 AT5G59550 120 / 3e-29 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10001582 [exp] 108 / 9e-28 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201300 [exp] 355 / 8e-121 AT2G39720 240 / 2e-75 RING-H2 finger C2A (.1) Potri.008G058100 [exp] 332 / 5e-112 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G087800 [exp] 304 / 3e-102 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 235 / 2e-74 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G034800 [exp] 231 / 4e-73 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G036700 [exp] 136 / 7e-37 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 132 / 1e-35 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 119 / 1e-30 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.015G028400 [exp] 119 / 2e-30 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 115 / 1e-29 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06547 [flax] [poplar] DUF1117 Protein of unknown function (DUF1117) CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10004712 pacid=23174285 polypeptide=Lus10004712 locus=Lus10004712.g ID=Lus10004712.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCTGTGCCGTCCTACTGGTGCTACCGTTGCAACCGCTTCGTCCGAGTATGGAGCAGGACGCCAGATGAGGAAGACGATTCTGTTTCGTGCC CCAATTGCGAGGGTGGATTCGTTGAAGAGATCGAGAATCATCGTCCGCACATGATCCCCATGGAGACAGCTCACCGCCGGAGGATCCCGCCGGCTACGTT TATGTCAGAGCATCGAAGAGGAAGGAGAGGCGGTGGAGGAGACAGGTCGCCAATTAATCCGGTCATCGTGATGCGCGGCGGAGCTGACAGCGGTAATTCC TTCACTGACGAGGGCGTTGGCGGTGGCGCAGGCGGCCGTGGATTCGAGCTGTACTACGACGATGGCGGCGGTTCAGGCTTGAGGCCGCTGCCGCCGAGTA TGTCGGAGTTCTTACTTGGATCTGGTTTCGAGAGGCTGATGGATCAGCTGTCGCAGATCGAACTGAACGGAATCAGTAGGCACGAGCATCCTCCGGCATC GAAGGCGGCGATTGAATCTCTGCCGACTGTAACAATCAACAACACGCACATCTCGATGGAATCTCACTGTGCAGTGTGCAAGGAGCCTTTCGAATTGGAA ACGGAAGCCCGTCAAATGCCGTGTAAGCATCTTTACCACTCGGATTGTATTCTCCCCTGGCTTTCTCTCCGCAATTCCTGCCCTGTCTGCCGCCACGAGT TGCCGGCGGCAGAGGAGGATCGACTGGTCAACGAGCAGGGCGATGACGTGGCCACTGGTGAGGAGGAAGCAGTTGGTTTGACGATCTGGAGGTTACCGGG CGGCGGGTATGCTGTCGGGCGGTTCACAGGAGCGATGAGGGGAGAAAGGGAGCTGCCGGTAGTGTACACAGAAATGGACGGCGGGTTTAACAATAACGGC GGGTTACCTCGCCGAGTATCGTGGGGATCGAGAGGTAGCAGAACTAGGAGAGATAACAACAGCGGCGGCGGAGGCCAAGGGCGCCGGATGTTCGGGTTGA ATCGGGTTTTCCGGAACTGGTTTGGTTGTTTCGGGTCGGAGTCAAGCAGTAGCAGGGCATCGTCTTCCACAGTTACCACTTCCTGGGCGAGGAGAGATCG ATGA
AA sequence Show only first row Show all	>Lus10004712 pacid=23174285 polypeptide=Lus10004712 locus=Lus10004712.g ID=Lus10004712.BGIv1.0 annot-version=v1.0 MSSPVPSYWCYRCNRFVRVWSRTPDEEDDSVSCPNCEGGFVEEIENHRPHMIPMETAHRRRIPPATFMSEHRRGRRGGGGDRSPINPVIVMRGGADSGNS FTDEGVGGGAGGRGFELYYDDGGGSGLRPLPPSMSEFLLGSGFERLMDQLSQIELNGISRHEHPPASKAAIESLPTVTINNTHISMESHCAVCKEPFELE TEARQMPCKHLYHSDCILPWLSLRNSCPVCRHELPAAEEDRLVNEQGDDVATGEEEAVGLTIWRLPGGGYAVGRFTGAMRGERELPVVYTEMDGGFNNNG GLPRRVSWGSRGSRTRRDNNSGGGGQGRRMFGLNRVFRNWFGCFGSESSSSRASSSTVTTSWARRDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	0	1
AT1G70590			F-box family protein (.1)		Lus10026694 [exp]	1.4	0.8827
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	1.4	0.8946
AT1G16210			unknown protein		Lus10012520 [exp]	3.5	0.8804
AT1G76920			F-box family protein (.1)		Lus10028591 [exp]	3.5	0.8686
AT5G44860			unknown protein		Lus10036220 [exp]	4.9	0.8758
AT5G60570			Galactose oxidase/kelch repeat...		Lus10041299 [exp]	5.5	0.8629
AT3G22530			unknown protein		Lus10010549 [exp]	6.6	0.8582
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	7.3	0.8640
AT3G50940			P-loop containing nucleoside t...		Lus10007391 [exp]	8.9	0.7907
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	9.5	0.8719

Compare expression of checked genes

Lus10004712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.