Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39710 567 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G02190 492 / 9e-173 EMB24, ATASP38, PCS1 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) AT1G66180 242 / 2e-75 Eukaryotic aspartyl protease family protein (.1) AT5G37540 229 / 4e-70 Eukaryotic aspartyl protease family protein (.1) AT2G03200 140 / 7e-37 Eukaryotic aspartyl protease family protein (.1) AT1G01300 132 / 1e-33 Eukaryotic aspartyl protease family protein (.1) AT3G54400 129 / 8e-33 Eukaryotic aspartyl protease family protein (.1) AT5G07030 120 / 2e-29 Eukaryotic aspartyl protease family protein (.1) AT1G09750 119 / 2e-29 Eukaryotic aspartyl protease family protein (.1) AT3G25700 118 / 6e-29 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040279 [exp] 778 / 0 AT2G39710 566 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10002707 [exp] 709 / 0 AT2G39710 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10000514 [exp] 625 / 0 AT2G39710 541 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024375 [exp] 537 / 0 AT5G02190 572 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010854 [exp] 273 / 2e-90 AT5G02190 294 / 4e-99 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Lus10010855 [exp] 241 / 2e-72 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003999 [exp] 142 / 4e-37 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 131 / 1e-33 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10020279 [exp] 126 / 1e-31 AT5G33340 393 / 3e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G201400 [exp] 642 / 0 AT2G39710 583 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G058000 [exp] 623 / 0 AT2G39710 607 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087600 [exp] 543 / 0 AT5G02190 548 / 0.0 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.017G131800 [exp] 258 / 3e-81 AT1G66180 570 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.004G085000 [exp] 246 / 9e-77 AT1G66180 605 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G087550 [exp] 214 / 9e-68 AT5G02190 234 / 8e-76 PROMOTION OF CELL SURVIVAL 1, EMBRYO DEFECTIVE 24, ARABIDOPSIS THALIANA ASPARTIC PROTEASE 38, Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 147 / 2e-39 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 138 / 4e-36 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.003G195500 [exp] 133 / 3e-34 AT3G54400 559 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G104600 [exp] 129 / 1e-32 AT1G09750 531 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10004713 pacid=23174265 polypeptide=Lus10004713 locus=Lus10004713.g ID=Lus10004713.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCATTTCCCTCCACCCTTCTTTCAACCTTCTCTTGATTCTCCTCATATTCCTGCTACCCAATCATCACCTCTGTCTCGCCTCAACCCAAC AGCCGCCGCCGCCACCGCACCAGATTTTCTCCCTCAAACTACAGACCAACCAACGCGTCCCCAATTCCAGGCTGTTCGGGTCCCTCGCCGCCAATTCCAA ATCCGACAAGATGCTGTTCCACCACAACGTCTCCTTAACCGTCTCCCTCACGGTCGGGTCGCCGCCGCAAACCGTCACGATGGTGCTCGACACCGGCAGC GAACTCTCCTGGCTCCGTTGCCGGAAAACCCCTGGCTTCAATTCGGTATTCGATCCCCTGGCTTCGAAATCTTACGGCAAGGTCCCTTGCGCATCCCCGA CCTGCCGGACTCGAACCCGGGACCTAACCATACCCGTATCCTGCGACCCGGCGAAGCTCTGCCATGTTATCGTGTCCTACGCGGACGCCACGTCTATTGA GGGGACCCTCGCTTTCGAAACGTTTCGGCTTGGGTCGATGTCGAGGCAGGGTACTCTGTTTGGGTGTATGGACTCGGGTTTCAGCTCTAACTCAGAAGAG GATGCCAAATCGACCGGGTTGTTAGGTATGAACCGGGGGTCGCTCTCGTTCATTAATCAAATGGGCTACCCGAAATTCTCGTACTGTATCTCGAGTATCG ATTCGTCAGGGGTTTTGCTTCTCGGCGATGCCAAATTCTCGTGGTTGAAACCGCTCAGCTACACTCCGATGGTCCGAATCAATGACCCTTTGCCCTACTT TGACCGGGTTGCTTACACGGTTCAACTGGAGGGCATAAAGGTAAACAACAAGGTGTTACCCTTACCGAAATCGGCTTTTCAACCGGACCATACCGGAGCG GGCCAGACCATGGTTGACTCAGGCACCCAGTTCAGTTTCTTATTGGGCCCTGTGTATACGGCTCTGAGGGCCGAGTTCCTGTCTCAAACGGCGGGAAAAC TGAAGGTGTTGAACGATGCGAATTACGTATTTCAAGGCGCCATGGACCTATGCTATTTAATCGATTCGACACAAAAGGTGGTCCCGCCAGGCCTACCTAC CGTCACTATGATGTTTCAAGGTGCGGAAATGATCCTCACGGATGATAAGTTGTTGTACCAGGTAGTCGGGGATACGAGGGGAAAAGATTCAGTGTGGTGC TTCACGTTTGGAAACTCCGAATTGTTGGGGATCGAGGCGTTCTTGATCGGACACCACCATCAACAGAATGTTTGGATGGAGTATGATCTAGCGAACTCTA GGATTGGTCTTGCGGAGGTCAGATGTGACGATGCACGTCAACAACTTGGTTTACATGGTTAG
AA sequence Show only first row Show all	>Lus10004713 pacid=23174265 polypeptide=Lus10004713 locus=Lus10004713.g ID=Lus10004713.BGIv1.0 annot-version=v1.0 MASSISLHPSFNLLLILLIFLLPNHHLCLASTQQPPPPPHQIFSLKLQTNQRVPNSRLFGSLAANSKSDKMLFHHNVSLTVSLTVGSPPQTVTMVLDTGS ELSWLRCRKTPGFNSVFDPLASKSYGKVPCASPTCRTRTRDLTIPVSCDPAKLCHVIVSYADATSIEGTLAFETFRLGSMSRQGTLFGCMDSGFSSNSEE DAKSTGLLGMNRGSLSFINQMGYPKFSYCISSIDSSGVLLLGDAKFSWLKPLSYTPMVRINDPLPYFDRVAYTVQLEGIKVNNKVLPLPKSAFQPDHTGA GQTMVDSGTQFSFLLGPVYTALRAEFLSQTAGKLKVLNDANYVFQGAMDLCYLIDSTQKVVPPGLPTVTMMFQGAEMILTDDKLLYQVVGDTRGKDSVWC FTFGNSELLGIEAFLIGHHHQQNVWMEYDLANSRIGLAEVRCDDARQQLGLHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39710			Eukaryotic aspartyl protease f...		Lus10004713 [exp]	0	1
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	2.0	0.9441
AT3G47570			Leucine-rich repeat protein ki...		Lus10010199 [exp]	2.4	0.9293
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	5.5	0.9432
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	6.9	0.9239
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10027004 [exp]	11.8	0.8977
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	12.7	0.9076
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10029252 [exp]	12.8	0.9255
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10037268 [exp]	14.8	0.9244
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	17.1	0.9207
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006611 [exp]	17.2	0.8965

Compare expression of checked genes

Lus10004713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.