Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16570 723 / 0 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) AT4G29510 66 / 3e-11 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT2G19670 65 / 5e-11 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT3G12270 58 / 2e-08 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT3G20020 53 / 3e-07 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT5G49020 49 / 8e-06 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT1G04870 46 / 7e-05 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008510 [exp] 651 / 0 AT4G16570 503 / 3e-169 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Lus10003223 [exp] 77 / 2e-16 ND 39 / 8e-04 Lus10000982 [exp] 67 / 2e-11 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 67 / 2e-11 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10010162 [exp] 50 / 4e-06 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 50 / 5e-06 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10034172 [exp] 49 / 1e-05 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043412 [exp] 49 / 2e-05 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10019439 [exp] 45 / 0.0001 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076500 [exp] 904 / 0 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1) Potri.006G149400 [exp] 65 / 5e-11 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.018G067200 [exp] 64 / 2e-10 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.010G014600 [exp] 53 / 6e-07 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 51 / 2e-06 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.001G030200 [exp] 49 / 1e-05 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.007G000300 [exp] 48 / 2e-05 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004715 pacid=23162960 polypeptide=Lus10004715 locus=Lus10004715.g ID=Lus10004715.BGIv1.0 annot-version=v1.0 ATGAGCTCTGATTCAGCTCAGCGCGTCTTCCAGCTCAAGCTCGACCCTCTCACCGGCGAGTCAGAGTGGGTGATCATCGACGACGGCGAAGACCAATCTT TTGGAAACTCAAATGCAGCCGGCTTGCTCGCAACGACGTCGTATCTCGACATGCTCAACGACTCCCCCCGTAACCGCGCTTTCCGTGAAGCCATCGACAA GACCGTTACCAAGCCCTGCCACGTCCTCGACATTGGTGCCGGGACTGGATTGCTTTCGATGATGGCGGCTCGGGCGATGGGTGGTGGTGGAGAGGTGACG TCTTGTGAGTCGTATCTTCCAATGGCGAAACTAATGAGGAAAGTTCTTCACGTTAATGGTATGGGGAAGGATATTAAGGTTATCAACAAGCGGTCCGACG AGCTTCAAATGGGGGTTGATATTCCTTCGCGTGCAGATGTTCTGGTCAGTGAGATTCTGGATTCTGAACTGTTGGGTGAAGGTTTGATTCCATCTCTGCA ACATGCTCACGACGAATTGTTGGTCGAAAATCCACTGACCGTGCCATATCGAGCGACGATTTATGGTCAGCTGGTCGAGAGTTCCTTCTTCCGGAAGCTA CACAATCTACACAACAACGAAACAAAGATTTCAGACGCGATTCGTCTCGTCCCAAATGGTTTAGACACAATTATCCAAGCGAAATCACAGCAGTATCCTC TGCATTGTGATTCTTTATGCAAAGAAATAAAATTGCTATCGAAGCCCTTTGAAATCTTTGAATTTGATTTTTGGAGAAGGCCTGAGAGCCATGGAGAGGC TAAGTTGCTTGTGGAGGCCACTGATGATGGTAGAGCTAATGGCATAGTGTCATGGTGGGTCCTTCAGCTTGACCGTGAAGGGACGATCTTTTACTCCACC GCACCTAAATGGATAGATCAGCCGGTAAACACAGGAGCTGGCTACTGGTGTGACCACTGGAAACAGTGCGTGTGGTTCATTCCAGACGAAGGGATACATG TCTCCAAGGGTGACGAGGTGGTTTTGCATGCTTTCCATGATGAGACCAGTGTTTCATATAACGTGGCGAGTGAAGGTAACGAGGTTAGCCAGTACGATTC AGCTCCTGGTGATTTTCACCTCCTAATGCCTCCCGAAAAGATTGCGATATACGGCGACATCAAATGGAGGTCAGCCATGTCAAAGGCTGTAGGGAATGCT TTGGAAGGAAGATTTGAACCACTCTGTATGGTTGCTGACGACAGTATTTTATTGACACTACTTGCTGCTCGTCTCTCTGAAACATCACAAGTGCTATCGT TGTTCCCTGGGTTACGAGACCAGGGTGTCCAATATCTTGAAACCATTGCCAAGGCGAATGGTATTGCTGCAAATCGTATTGAAGTTGTTAAAGACAAGAA AAACATTGCACTGCACTGTACTGATCAGAAAAAGGTTGATCTGCTAATTGGCGAACCGTACTATCATGGTAGCGAGGGGATGCTTCCTTGGCAAAATCTG CGGTTTTGGAAGGATCGGACGATACTAGAGCATTTCCTGTCCGAGGACGCGGCCATTTTACCTTGTAAAGCACTACTAAAAGCATGTGCCATGTCTCTTC CGGAACTCAGCAAAGCCATCACATTAATGGAGTTCGATTTCAGGAAACCAATAGCTTCGTGTCGTGAAAAAGCCGAAGTCAGGTTCATGGAGCCTGGAAT CTGCCATGGATTCGTGCTGTGGCTGGACTGGGTTATGGATGCAAGCGAATCAGTTGTGATATCAACTGGCCCGGATGAGAGATACTGGAAACAAGGCGTC AAGCTTCTGTCGCAACCGGTCCCGGTTGGAGCTCTGGGCCAGAACTCGGGTGGATTATGTTCATCTGTAATTGAAGCCGAGTTCGACCAATTGACCGGCG AACTCGTTATTCAGAATGACTTCTGTTAG
AA sequence Show only first row Show all	>Lus10004715 pacid=23162960 polypeptide=Lus10004715 locus=Lus10004715.g ID=Lus10004715.BGIv1.0 annot-version=v1.0 MSSDSAQRVFQLKLDPLTGESEWVIIDDGEDQSFGNSNAAGLLATTSYLDMLNDSPRNRAFREAIDKTVTKPCHVLDIGAGTGLLSMMAARAMGGGGEVT SCESYLPMAKLMRKVLHVNGMGKDIKVINKRSDELQMGVDIPSRADVLVSEILDSELLGEGLIPSLQHAHDELLVENPLTVPYRATIYGQLVESSFFRKL HNLHNNETKISDAIRLVPNGLDTIIQAKSQQYPLHCDSLCKEIKLLSKPFEIFEFDFWRRPESHGEAKLLVEATDDGRANGIVSWWVLQLDREGTIFYST APKWIDQPVNTGAGYWCDHWKQCVWFIPDEGIHVSKGDEVVLHAFHDETSVSYNVASEGNEVSQYDSAPGDFHLLMPPEKIAIYGDIKWRSAMSKAVGNA LEGRFEPLCMVADDSILLTLLAARLSETSQVLSLFPGLRDQGVQYLETIAKANGIAANRIEVVKDKKNIALHCTDQKKVDLLIGEPYYHGSEGMLPWQNL RFWKDRTILEHFLSEDAAILPCKALLKACAMSLPELSKAITLMEFDFRKPIASCREKAEVRFMEPGICHGFVLWLDWVMDASESVVISTGPDERYWKQGV KLLSQPVPVGALGQNSGGLCSSVIEAEFDQLTGELVIQNDFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	0	1
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	2.8	0.9032
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10041333 [exp]	3.2	0.8892
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	4.8	0.9120
AT4G35560		DAW1	DUO1-activated WD40 1, Transdu...		Lus10035989 [exp]	9.6	0.8238
AT1G69020			Prolyl oligopeptidase family p...		Lus10026683 [exp]	12.8	0.8538
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Lus10019486 [exp]	13.1	0.8758
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	13.2	0.8835
AT1G27595			unknown protein		Lus10007230 [exp]	14.0	0.8922
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10019778 [exp]	14.6	0.9022
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	14.7	0.8341

Compare expression of checked genes

Lus10004715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.