Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35720 644 / 0 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59725 77 / 5e-15 DNAJ heat shock family protein (.1) AT3G47940 76 / 1e-14 DNAJ heat shock family protein (.1) AT3G08910 71 / 5e-13 DNAJ heat shock family protein (.1) AT1G80030 71 / 7e-13 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT4G39960 70 / 1e-12 Molecular chaperone Hsp40/DnaJ family protein (.1) AT5G01390 67 / 2e-12 DNAJ heat shock family protein (.1.2.3.4) AT3G62600 69 / 3e-12 ATERDJ3B DNAJ heat shock family protein (.1) AT4G28480 68 / 3e-12 DNAJ heat shock family protein (.1.2) AT2G20560 67 / 7e-12 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008515 [exp] 1014 / 0 AT2G35720 670 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10030803 [exp] 74 / 4e-14 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 73 / 1e-13 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10013981 [exp] 71 / 6e-13 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10032100 [exp] 70 / 1e-12 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 70 / 1e-12 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10036668 [exp] 69 / 2e-12 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10015402 [exp] 69 / 2e-12 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10022297 [exp] 68 / 4e-12 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158200 [exp] 703 / 0 AT2G35720 711 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G076600 [exp] 699 / 0 AT2G35720 719 / 0.0 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G073900 [exp] 72 / 5e-13 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.003G031800 [exp] 71 / 1e-12 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.015G066100 [exp] 69 / 1e-12 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 69 / 1e-12 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 69 / 4e-12 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 68 / 4e-12 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 67 / 6e-12 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 67 / 7e-12 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11875 [flax] [poplar] DUF3395 Domain of unknown function (DUF3395)
Representative CDS sequence Show only first row Show all	>Lus10004716 pacid=23162953 polypeptide=Lus10004716 locus=Lus10004716.g ID=Lus10004716.BGIv1.0 annot-version=v1.0 ATGAACTCGAAGGAAGAAGGAGCTCCCAACAGGGAGCTGTACGCGGTGCTTCAAGTCTCCCCTGAATCCACCGTTGACGAAATCAAGAAGGCTTATCGCT ACTGGGCTCAAGTGTATCATCCCGACAAGTACCAAGACGTTCATATGAAGGAAACGGCGACTGAGAACTTTCAAAGGATATGTCAAGCGTACGAGGTGCT ATCAGACGAGATTAAAAGGCAGATATACGATATATACGGTATGGAAGGGGTGACTGCCGGTATGGAGCTCACAACAAGGACGAGTAAATTGGAAGAGTTG AAGGAAGAGCTCGAGAGATTGCAGAAGAAGAAGGAAGAAGAGAAGATGGCAGCTCAGTTCTCGCCCTCTGGTGCAGTATTGACTAATCTTTCTGTGCCTC AGTTTCTTGATGGAGACGGCATCTTGAGTGGAATGGGTATGACTAGTCAAGTACAGATCCAGCTGTCGAAGGATACGAATCTTGCAATGGGTGGAAATTT AGAAGTTAATAACCATGGTGCTGGCTCAGCTGCTTCGACTGTAATACAGCATCAAATTTCTCCTGCTCAGTCGATGCAATTTCAAGCTTCGGTCGGGTTA CAGTCACTAATCGGTGTGCAAACAACCCGCATCATTTCTTCACATTCAACAGCTACATTCAACATCCAAAAGTCTTTCCAAGACGGTTCGATCAATCTTT CTAATACCTGGACTCGCCAACTGTCTCCGACAGCTACCGGGAATATACAACTTGTTCTTGGTGATAAGTCATCCATAGGCGTCGGGTGGCAGAAGAAGGA TGAGAAAATGTCTGCTAGTGGAGAATTGAAAGTCGGTATAGGTTTTATCGACGGATCAGCTCAATATGTTCATCGAGTTTCCAAGAATTCGCATGGTCGT ATTGTAGGAAGATGCGGAAGCACTGCTCTTGAGATTGAAGTTGGTGTTGGGAGGAAGATATCCGATTTGACCTCTGTCCGGATGATGTATTCCGTCGGAA TTCAGGGCGTATTTTGGAAATTAGAAATGCGCCGTGGATCTCAAAAATTACTTGTGCCGGTATTGCTTTCCCCCTATTTCAATCCATTGTTCGCGGTCAG AGCATTCGTAGTTCCAATGTCTCTCTACTTCCTGCTCGAGAGATTTGTTGCCAAGCCTCTTCTCCAATGGAGGGAGAAGGGGAAAGCTTTGGAGAATAAG CAAAAGACTTCAGTAAAGGTCAAAGAGGCGCGAATAGCAGCAGAGAAGTCTCAGAAGTTGTTAAGAATCGTGGCGGAGAGGAAAAGGACTAAGCAAAAGG AATCGAATGGACTCATTATCGATCGGGCAGTGTACGGTTGTCGGGAAGTAGTTAGTAGACAAGATGATGGATCGATCCCCAATGGTGAAACGGCTTTGGA TGTCATCGATGTCACAGTTCCTCTCAGTTTCTTGGTTAACGATTCCGGCAAACTTCAGCTACACAAAGGTGTGAAGAAGTCCGGGATTATGGGGTTCTGC GATCCCTCACCTGGAGAACAGAACCAGTTGCTCGTCGAATACACGTATCACGGCCAGAAGTTCAAGGCGATCGTGGATGACTATGACGAGCTGATAATAC CTCAGCACGCTCATCTAGTCTGA
AA sequence Show only first row Show all	>Lus10004716 pacid=23162953 polypeptide=Lus10004716 locus=Lus10004716.g ID=Lus10004716.BGIv1.0 annot-version=v1.0 MNSKEEGAPNRELYAVLQVSPESTVDEIKKAYRYWAQVYHPDKYQDVHMKETATENFQRICQAYEVLSDEIKRQIYDIYGMEGVTAGMELTTRTSKLEEL KEELERLQKKKEEEKMAAQFSPSGAVLTNLSVPQFLDGDGILSGMGMTSQVQIQLSKDTNLAMGGNLEVNNHGAGSAASTVIQHQISPAQSMQFQASVGL QSLIGVQTTRIISSHSTATFNIQKSFQDGSINLSNTWTRQLSPTATGNIQLVLGDKSSIGVGWQKKDEKMSASGELKVGIGFIDGSAQYVHRVSKNSHGR IVGRCGSTALEIEVGVGRKISDLTSVRMMYSVGIQGVFWKLEMRRGSQKLLVPVLLSPYFNPLFAVRAFVVPMSLYFLLERFVAKPLLQWREKGKALENK QKTSVKVKEARIAAEKSQKLLRIVAERKRTKQKESNGLIIDRAVYGCREVVSRQDDGSIPNGETALDVIDVTVPLSFLVNDSGKLQLHKGVKKSGIMGFC DPSPGEQNQLLVEYTYHGQKFKAIVDDYDELIIPQHAHLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10004716 [exp]	0	1
AT5G17270			Protein prenylyltransferase su...		Lus10035305 [exp]	10.3	0.8162
AT5G19485			transferases;nucleotidyltransf...		Lus10026802 [exp]	11.0	0.7348
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	12.1	0.7986
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	28.6	0.7707
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	30.3	0.7804
AT1G63490			transcription factor jumonji (...		Lus10008531 [exp]	31.6	0.7303
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10005547 [exp]	33.6	0.7095
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	44.6	0.7421
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	54.7	0.6987
AT3G02065			P-loop containing nucleoside t...		Lus10006736 [exp]	63.9	0.6804

Compare expression of checked genes

Lus10004716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.