Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16600 631 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT2G35710 625 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) AT5G18480 105 / 3e-24 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G08990 76 / 2e-14 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT1G54940 66 / 4e-11 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT3G18660 64 / 1e-10 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT4G33330 63 / 2e-10 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G77130 62 / 5e-10 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008518 [exp] 833 / 0 AT2G35710 632 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) Lus10027949 [exp] 95 / 1e-20 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 72 / 4e-14 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1) Lus10020890 [exp] 69 / 3e-12 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10033485 [exp] 68 / 7e-12 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10028623 [exp] 68 / 1e-11 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10018922 [exp] 66 / 3e-11 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10021731 [exp] 66 / 4e-11 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10031507 [exp] 65 / 6e-11 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G158000 [exp] 654 / 0 AT4G16600 678 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.003G076800 [exp] 654 / 0 AT4G16600 633 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.013G049100 [exp] 91 / 3e-19 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.005G187900 [exp] 69 / 3e-12 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.005G061600 [exp] 67 / 2e-11 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G033500 [exp] 66 / 2e-11 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.007G107200 [exp] 66 / 2e-11 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.014G029900 [exp] 66 / 3e-11 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.013G022900 [exp] 65 / 6e-11 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10004717 pacid=23162926 polypeptide=Lus10004717 locus=Lus10004717.g ID=Lus10004717.BGIv1.0 annot-version=v1.0 ATGTTGAGCTGTAATGGGTTGTTGCTGTTCTTCTTCTTAGCTCTTGCCGTGTTAGGAGGATCCGAAACAGCAGCGTTTGGGCCAGAGAAGGAGATGATGG TTCATCAGTTGTGGCCGAAGCACAGGAATGCTTACGCGACGATGATGTACATGGGTACTCCAAGGGACTACGAGTTCTACGTTGCTACTCGCGTCCTGCT CAGATCTTTGCGCAGTCTCTCTGTAGATGCTGATCTCGTCGTCATCGCTTCGCTCGATGTTCCTCCCCGATGGGTCCAAGCCTTGGAAAAGGAAGATGGG GCGAGAGTGGTGAGTGTGGAAAATGTGAACAATCCGTACAAGGACCAGAGCAACTTCGACCATAGATTCAAGCTTACACTGAACAAGCTCTACGCTTGGA GCTTGGTGGACTACGAGCGGGTTGTCATGTTGGACGCTGATAATCTCTTCCTTCGCAACACCGACGAGCTTTTCCAGTGTGGCCAGTTCTGTGCTGCGTT CATCAACCCCTGCATTTTCCACACTGGTCTCTTTGTATTGCAGCCGTCTAATGAAGTGTTCAAAGACATGCTTCATCAACTGGAAGTGGGGAAAGACAAC CCGGATGGTGCAGACCAAGGTTTCATCGGTGGATACTTCCCTGACTTGCTTGACAAGCCACTGTTCCACCCTCCAGCACATGGCTCCGTTGTTGCGGATG GCTCGTATAGGCTTCCTCTTGGTTATCAGATGGATGCTTCTTACTACTACCTTAGACTCCGATGGAACGTCCCTTGTGGCCCTAACAGTGTCATAACTTT CCCCGGTGCTTCATGGTTGAAGCCATGGTACTGGTGGTCGTGGCCCGTTCTTCCTCTAGGCATCGACTGGCACGAGAAACGTCGTCAGCATCTTGGATAT GGAGCAGAGATGCCAATGGTGGTTATCCAATCAATACTCTACCTAGGCATCATAGCCGTGACTCGTCTAGCCCGACCAAACCTAACCAAGCTATGCTACC GAGGAAGCAGCGACAAGAACATCATCTCCTCACTCCAATCCGGCCTAAAGGTGCTATCTTTGTGGGCGATACTTGCAGCCTACGTAACCCCATTCTTCAT AATCCCTTGCACCCTCCACCCTCTGCTAGGCTGGTCACTCTACCTCCTCGGCACATTCGCACTCTGCTCGGTCGCCATCAACGCGTTCATGCTCCCGACG ATCCACGTCCTGACACCATGGATTGGGATTTTCGGGGTTCTGCTCGTGATGGCGTGTCCCTGGTACACCAATGGAGTTGTGAGAGCACTTTCTGTATTCG CCTACGCCTTCTGTGCTGCTCCAGTGCTCTGGATTTCTTCCACCAAAGTCGTCGCTAGCCTTCAGGTATCGCTCGAACGGGAAGCCTTCTTCCCTAAGCT CGGAGAATACTCTTCGCCTTCTTCTTCGTCTTCTTCTTCCTCGCCACGCTTCGGGTTGAACAAGCTATGCTAA
AA sequence Show only first row Show all	>Lus10004717 pacid=23162926 polypeptide=Lus10004717 locus=Lus10004717.g ID=Lus10004717.BGIv1.0 annot-version=v1.0 MLSCNGLLLFFFLALAVLGGSETAAFGPEKEMMVHQLWPKHRNAYATMMYMGTPRDYEFYVATRVLLRSLRSLSVDADLVVIASLDVPPRWVQALEKEDG ARVVSVENVNNPYKDQSNFDHRFKLTLNKLYAWSLVDYERVVMLDADNLFLRNTDELFQCGQFCAAFINPCIFHTGLFVLQPSNEVFKDMLHQLEVGKDN PDGADQGFIGGYFPDLLDKPLFHPPAHGSVVADGSYRLPLGYQMDASYYYLRLRWNVPCGPNSVITFPGASWLKPWYWWSWPVLPLGIDWHEKRRQHLGY GAEMPMVVIQSILYLGIIAVTRLARPNLTKLCYRGSSDKNIISSLQSGLKVLSLWAILAAYVTPFFIIPCTLHPLLGWSLYLLGTFALCSVAINAFMLPT IHVLTPWIGIFGVLLVMACPWYTNGVVRALSVFAYAFCAAPVLWISSTKVVASLQVSLEREAFFPKLGEYSSPSSSSSSSSPRFGLNKLC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16600			Nucleotide-diphospho-sugar tra...		Lus10004717 [exp]	0	1
					Lus10022773 [exp]	1.0	0.9674
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	1.4	0.9625
					Lus10025243 [exp]	3.5	0.9440
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	4.9	0.8719
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	7.7	0.9160
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	8.2	0.9178
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Lus10038082 [exp]	9.0	0.9081
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	9.2	0.9115
AT3G11760			unknown protein		Lus10021254 [exp]	10.5	0.9063
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10034191 [exp]	12.6	0.9090

Compare expression of checked genes

Lus10004717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.