Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60610 51 / 4e-07 F-box/RNI-like superfamily protein (.1) AT1G67390 50 / 6e-07 F-box family protein (.1) AT4G10400 49 / 2e-06 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT4G09920 47 / 6e-06 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G16930 45 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22700 45 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G56690 45 / 3e-05 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT2G26860 45 / 4e-05 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT2G04230 45 / 5e-05 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G60410 44 / 6e-05 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008517 [exp] 221 / 4e-70 AT4G00160 55 / 5e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10008524 [exp] 171 / 2e-50 AT1G16930 59 / 3e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000727 [exp] 133 / 8e-36 AT5G02910 54 / 1e-07 F-box/RNI-like superfamily protein (.1.2) Lus10008511 [exp] 128 / 4e-34 AT1G16930 52 / 6e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10000726 [exp] 120 / 2e-31 AT5G44940 48 / 7e-06 F-box/RNI-like superfamily protein (.1) Lus10000728 [exp] 114 / 5e-29 AT5G02920 50 / 8e-07 F-box/RNI-like superfamily protein (.1) Lus10000729 [exp] 111 / 9e-28 AT5G02920 49 / 2e-06 F-box/RNI-like superfamily protein (.1) Lus10007058 [exp] 52 / 2e-07 AT5G56810 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011410 [exp] 52 / 2e-07 AT1G69630 69 / 9e-13 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G011200 [exp] 60 / 3e-10 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.015G002100 [exp] 50 / 1e-06 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 48 / 2e-06 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G098700 [exp] 42 / 0.0002 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.011G024200 [exp] 42 / 0.0003 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004718 pacid=23162965 polypeptide=Lus10004718 locus=Lus10004718.g ID=Lus10004718.BGIv1.0 annot-version=v1.0 ATGGCGGAGACGACTGAAGAACAAACTACCGACCGGATCAGCGGCCTTCCCGATGAAATCCTCATCAAGATACTAACAGCGGCCAATCTCGACACGAAAA CCGCCATCCAAACATCCCTCCTCTCCCGCCCTTGGCAAAACCTCTGGAAATCAGTCCTCTGGAACGATTGGCAGCTGTGGAATTCGAAGTTCTCGGAGGC GCTCACAACGCTCCGTTTGTACCGATGCGTGTTGCATCACTCGCCACTGTCCGGTCCCAATTTGACCGATTTGGAGGTGATCAAATGCAAGTTCGGGTCT CGTCGATCATTTATCATTTCGGGTGCTAAATTGGTTAGGATCGTGTTGGTACATTCTAACGGGCTACCGTCATATCATCCCAATGTTGAGATCCATGCAA GTAATTTGAAGTCTTTTACGTGCAAGGGGCTCGATCCGGCCCGGTTTACGAGTTGGCAATTCCAGTCATTCGAATGTTTGGATTTCGATGTCTACTTCAG TACCACTTGGCAAGCGAGTTTAGATTGTGTTTGTATGCTTCGCAGCTTCCGCAAAGCCGAGCGTGTGAAGCTACACGTTAACTCCGATATGGCGCTTGCT ATGTTCCTAGATCTACTAGAGGAGCAAGAGTCTCCATTTAAGAGACTGAGTTGCTTGGAACTGCACAACAGTAGGAGGGTTCTATCTAGTCCTAGAGTGT TCAACACTTTGATCAGTTACTTCTTCGACCAAGCTATTCCGAAAACTGCTCCCTTAGATCACATTTTCGCCTCAGATTCTCGCAACTACGACGACTCTTG TGCCGTAGTTGTACGCAAGAGCGACTTAATGGCTTAA
AA sequence Show only first row Show all	>Lus10004718 pacid=23162965 polypeptide=Lus10004718 locus=Lus10004718.g ID=Lus10004718.BGIv1.0 annot-version=v1.0 MAETTEEQTTDRISGLPDEILIKILTAANLDTKTAIQTSLLSRPWQNLWKSVLWNDWQLWNSKFSEALTTLRLYRCVLHHSPLSGPNLTDLEVIKCKFGS RRSFIISGAKLVRIVLVHSNGLPSYHPNVEIHASNLKSFTCKGLDPARFTSWQFQSFECLDFDVYFSTTWQASLDCVCMLRSFRKAERVKLHVNSDMALA MFLDLLEEQESPFKRLSCLELHNSRRVLSSPRVFNTLISYFFDQAIPKTAPLDHIFASDSRNYDDSCAVVVRKSDLMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60610			F-box/RNI-like superfamily pro...		Lus10004718 [exp]	0	1
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	2.4	0.7879
AT1G16250			Galactose oxidase/kelch repeat...		Lus10013899 [exp]	6.9	0.7787
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	15.2	0.7554
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10001591 [exp]	18.7	0.7255
					Lus10012006 [exp]	19.0	0.7233
AT1G70480			Domain of unknown function (DU...		Lus10029147 [exp]	20.9	0.7513
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	23.0	0.7237
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	27.5	0.7233
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10003017 [exp]	29.4	0.7237
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	30.1	0.7428

Compare expression of checked genes

Lus10004718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.