Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47500 517 / 0 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT5G19730 295 / 8e-98 Pectin lyase-like superfamily protein (.1) AT2G36710 293 / 2e-96 Pectin lyase-like superfamily protein (.1) AT5G55590 291 / 6e-96 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT1G05310 270 / 7e-88 Pectin lyase-like superfamily protein (.1) AT2G36700 265 / 1e-86 Pectin lyase-like superfamily protein (.1) AT2G21610 261 / 7e-85 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G07420 257 / 3e-83 Pectin lyase-like superfamily protein (.1) AT5G07430 257 / 4e-83 Pectin lyase-like superfamily protein (.1) AT1G69940 245 / 1e-78 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012942 [exp] 315 / 3e-105 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 296 / 4e-99 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 297 / 2e-98 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 285 / 2e-93 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10016605 [exp] 284 / 3e-93 AT5G55590 409 / 3e-142 QUARTET 1, Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 280 / 2e-92 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 276 / 1e-89 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 267 / 3e-87 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 268 / 9e-87 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G076900 [exp] 555 / 0 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 309 / 3e-103 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 299 / 2e-99 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 291 / 1e-95 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 287 / 4e-94 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 273 / 1e-88 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 269 / 2e-87 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 261 / 9e-85 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.012G113533 [exp] 241 / 9e-77 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 241 / 9e-77 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10004720 pacid=23162956 polypeptide=Lus10004720 locus=Lus10004720.g ID=Lus10004720.BGIv1.0 annot-version=v1.0 ATGGCGTCGTTCTATCCTCTTACCTTCCTCTTCCTAATTATTTGTTGTTTCTTCTTGTTGGATAATGCGGTTTCATTGACTAGTTCTTCTTCTTCTTCCA CTTTTATTGCAGCTTCTCCAGCTCCAGCTCCGGCTCCGGCGAATTACCGCCACGGAGGCGGACATCACTGGGTTGCACCGGTCGGACATAGAGTCATCAC GGTGGATATCAGCGGGTCGGGTCAGTTTCGATCGGTGCAGGCGGCGATTGACTCGGTGCCGGAGAACAACGACGAGAATGTCCTCATCCAGCTCAGCCCC GGCGTCTACATAGAGAAGGTGGTGGTGCCGGCCACGAAGCCGTACATAACGCTGGAAGGGACGGCGGGGAGACACGCGACGGTGGTGGAATGGCACGACA GGGCAAAAGACCCGGCGCCTAACGGCGAGCAGCTCCGAACTTACCGGACAGCCTCCGTCACCGTCTTCGCCAACTACTTCACCGCCCGTAACATCAGCTT CAAGAATACGGCGCCGGCACCGAAGCCCGGGATGCAAGGGTGGCAGGCAGCGGCGTTCAGGATCTCCGGCGACAAGGCGTACTTCGTCGGGTGCGGATTT TACGGGGCGCAGGACACGTTGTGTGATGATGCAGGGAGGCATTACTTCAAGGATTGTTACATTGAAGGGTCGATTGATTTCATCTTTGGCAATGGAAGGT CCATGTACAAGGATTGCGAGTTACATTCAATAGCGAAGAGATTTGGATCGATAGCGGCCCAAGACAGGAAATCGCCAGACGAGAAGACGGGCTTTGCATT CTTGAACTGTAAGGTGACTGGAACGGGCCAGCTCTACGTGGGCCGGGCCATGGGCCAGTACTCCAGGATTGTCTACTCACACACCTACTTTGATGACGTG GTTGCACACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACAGCGTACTTCGGAGTGTACAAGTGTTTCGGACCAGGAGCAGAGAAAG TGAGAGGAGTTTCATGGGCGAGGGAGCTAGACTATGACTCTGCTCACAAGTTCCTGGCCAAGAGCTTCGTCAATGGCCGCCACTGGCTTCCGCTTGATGC ATTTCTTAGCTAG
AA sequence Show only first row Show all	>Lus10004720 pacid=23162956 polypeptide=Lus10004720 locus=Lus10004720.g ID=Lus10004720.BGIv1.0 annot-version=v1.0 MASFYPLTFLFLIICCFFLLDNAVSLTSSSSSSTFIAASPAPAPAPANYRHGGGHHWVAPVGHRVITVDISGSGQFRSVQAAIDSVPENNDENVLIQLSP GVYIEKVVVPATKPYITLEGTAGRHATVVEWHDRAKDPAPNGEQLRTYRTASVTVFANYFTARNISFKNTAPAPKPGMQGWQAAAFRISGDKAYFVGCGF YGAQDTLCDDAGRHYFKDCYIEGSIDFIFGNGRSMYKDCELHSIAKRFGSIAAQDRKSPDEKTGFAFLNCKVTGTGQLYVGRAMGQYSRIVYSHTYFDDV VAHGGWDDWDHVSNKNKTAYFGVYKCFGPGAEKVRGVSWARELDYDSAHKFLAKSFVNGRHWLPLDAFLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	0	1
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	1.0	0.9341
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	4.0	0.9210
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	6.2	0.9250
AT5G49170			unknown protein		Lus10024954 [exp]	6.5	0.9030
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	6.9	0.9240
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10009475 [exp]	8.4	0.8618
AT1G06450			Polynucleotidyl transferase, r...		Lus10008043 [exp]	8.7	0.8955
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10041654 [exp]	9.2	0.8893
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Lus10019496 [exp]	11.6	0.8634
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011559 [exp]	11.7	0.9148

Compare expression of checked genes

Lus10004720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.