Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47490 971 / 0 RGPR-related (.1) AT5G47480 958 / 0 RGPR-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008520 [exp] 2314 / 0 AT5G47490 1143 / 0.0 RGPR-related (.1) Lus10028946 [exp] 1654 / 0 AT5G47490 1196 / 0.0 RGPR-related (.1) Lus10007471 [exp] 1102 / 0 AT5G47490 778 / 0.0 RGPR-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157800 [exp] 1432 / 0 AT5G47490 1114 / 0.0 RGPR-related (.1) Potri.003G077100 [exp] 1399 / 0 AT5G47490 1033 / 0.0 RGPR-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004721 pacid=23162944 polypeptide=Lus10004721 locus=Lus10004721.g ID=Lus10004721.BGIv1.0 annot-version=v1.0 ATGGATTCTAATCCTCCATTCCAAGAGACGGAGGATCAAATCGACGATGATTTCTTCGACAATTTAGTTGGAGATGATTGCGGTGCCGCGAGCAGCTCGC AGAACAAGTTGGCTATGGAGGAGAGTGATTCCGACGAGGCCAAGGCGTTTGGTAACCTGAGCATTGAGGATTCGAACGGCGTTGACGATGGGTTTGAGGA GGTGAGGAATGGAGAGGAATTGGAGGATGTTAATGTGGAAGAGAGTGATGCTGCATTGAACAATGCGATGGATTTGAATAATGACGGGACGGCGTCGGAG GCTGTGCCTGATTTGAATCCAGTAACTGATATCGGATCAACAAAGTCGGGGGCTAAGGAGGTGGGATGGAGCTCGTTGTTTTCCGATTCATCACCGGACG GAGACCGTCATGGTTTTGGTTCGTACTCTGATTTTTTCAGGGAGTTGGGAGGCGATACTAATGGCTCTCCTGTAAAAGTTGACGGAAGAAGTGTGAATGT AGAACAAGTTACGAGTGGTGAATTGCAGAATTCTGCCAGTTATGAGCAGTATCAAGACGGTACACAAGTTCATGGTGGCTATTCCCAAGAGAGTGCCGGT GTTCAGGATGTTAACAGCACTCAGTACTGGGAAAGTATGTATCCTGGGTGGAAATATGATATGGATACTGGGCAGTGGTACCAAGTAGATGGATATAGTA CGGCAGGAGGTGTGCAAGAGAGTTATGGTGCTAATTTAGGAAGCGAATGGGCCGATGCTTCTGTGGGGAAAGGAGCGGTTAACTTCCTGCAGCACAGCTC GCAGTCCGTGACTGGAACTATGACTGGGACGAGCACAACTGAGAACGTGTCTACCTGGAATCAGGTTTCTCAAGGAAGTAACAATGGTTATCCAGCACAT ATGATTTTTGACCCGCAATATCCGGGCTGGTATTACGACACGATTGCACAAGAATGGCGTTCGCTGGAGAGCTACACTTCATCAGCTCAATCAGTGATTC CCCAAACTCAAGAGAGACAGAGTCAGAATGGCTATGGTTTCAACACTAATTATTCACAGAATGTTAGCAATGCATACATTAGTCAGGGACAAGATATTAG CGGTAGTGATTCCAATAGAGGCTATAACCAGAGAGATATGAATATGTGGTCTGCTCAGAGTGCTTCCAATAACAATTTCAGTCAAGATTTTGGCCAACAG CAGAAGTTTCAGAGCTCCTATGGTTCAAATGCCTTCATGGGCAGTCATCTTGATAATCAACAGTCCTTTAGTAACTTGGGAACAGTTCCTTCGTGTGAAA AAATGCAGCAAGGCCAATCTGAAGCCAATGGGTTTTTGGGTTCGCATAATAATTTTGGCCAGGGCGGACACTTTAATCAGCAGCTTAATCAGGGACATTC GAATCAGATAGGGCAGATGAATTTTTCAAATGATTTTTATAGCAGTCAGAAACCAGTAAGTTTTACTGAGCAGTCGTATCAGAGCAATCAGCAATTATCT CAGGCTCCGGGCAGTGGAAGATCTTCTGCTGGCCGTCCTCCACATGCACTGGTTTCTTTTGGGTTTGGTGGAAAGCTTATTGTAGTGAAGGATAGTGCCT TTGGAAACTCTTCGTTCGGAAACCAGGCTGCTGATGGAGGCTCCATATCTGTTATGAATTTGATGGAGGCTGTTTCTGGAAGTAGTACAGCCAATGTTTC AGCTGTTGGAGGCACATCCTGCAATTATTTCCGTCCTCTCTGCCAACAGTTATTTCCTGGACCACTGGTCGGTGGAAATGCTGGAACTAAAGATTTAAAT AAGTGGATTGACGAGAGGATAGCCAACTATGAATCACCCGATATGGATTACAGAAAGCGCGAGGCATTGAAGCTTCTCCTTTCTTTGCTTAAAATAGCTT GCCAGCATTATGGAAAACTTCGATCTCCTTTTGGGTCTGACACATCATTGAGGGAAAATGATACTCCAGAATCAGCAGTTGCGAAACTTTTTTCATCTGC CAAGAGTCAACTCAGAGAATATGGGGCTCTTTGCCACTGTTTGCAAAATACGCCATCTGAAGCACAACTTCAGGCAACTGCTTCTGCGGTACAAAATCTT TTGGTTGCTGGTAGAAAAGCAGAAGCTTTACAGTTTGCAATAGAAGGCCAGTTGTGGGGACCTGCACTTGTGCTTGCATCTCAACTTGGAGATCAGTTCT ATGTTGATACTGTGAAGCAAATGGCATTACGTCAATTGTTGCCTGGATCACCTTTACGGACTTTGTGCCTTCTTATTGCGGGACAACCAGCAGAAGTTTT TTCGTCGAATACCAGAAATAATGGTGGTTTTTTCAGTGGTGCAGTTGGCACTCAACAACCTCTGATTCCTGGCGCAAATAGTATGCTCGATGATTGGGAA CAGAATCTGGCTCTGATAACTGCAAACAGAACGAAAGACGATGAGCTTGTGATCATTCACCTCGGGGACTGTCTGTGGAAGGATAGGAGTGAGATTACAG CAGCACATATTTGCTATTTAGTTGCGGAAGCAAACTTCGAGACTTATTCAGACACTGCAAGGCTGTGCCTTATCGGTGCAGATCACTGGAAGCATCCCCG TACTTTCGCTAACCCCGAGGCTATTCAGAGAACGGAGCTTTATGAGTATTCAAAGGTACTAGGTAACTCCCAGTTCATCTTGCAGCCATTTCAGCCATAT AAGCTTGTTTATGCTTATATGCTGGCTGAAATAGGTAGAGTCTCAGACTCTTTGAAGTACTGCCAAGCAGTGTTGAAATCTTTGAAAACCGGTCGAGCTC CCGAAGTCGAAACATGGAAACAATTAGTATTGTCCCTCGAGGAAAGGATTAGAATACACCAACAGGGTGGATACGGTACGAATTTGGCACCGGCAAAGTT TGTTGGCAAACTGCTCAACTTCTTCGATAGTACGGCCCATCGCGTCGTTGGGGGTCTACCACCACCGGCACCATTGCCGAGTTCGCACGGTCTACACAGT AACTATCAAGAACAGCAAATGATGGCTCCCAGGGTTGCAGCTAGCCAATCAACAATGGCTATGTCAACGTTGATCCCATCTGCTTCCATGGAGCCCATAA GTGACTGGGTGGCCGATGGTAACAAAATGGGCAGACATTCGAGAAGTGTCTCTGAGCCTGACTTCGGTAGAACTCCAAGACAGGCTCAGCCGGCCGATTC CTCACCAGCTACCCCAGCCCCAGCCCCAGCCACCACAACGGTGGCCTCCACCACCACAGCCACAGCCAATTCCCAAGAGAAGCCACCGAATCCGACAGGG GGATCTCGCTTGGGTCGTTTCTCCTTCGGGTCACAGCTGCTTCAGAAGACAGTTGGCCTCTTACTGTCTACTCGCTCAGATAAACAGGCCAAGTTAGGCG AGAAGAACAAATTCTATTACGACGAAAAGCTGAAGAGATGGGTGGAAGAAGGTGTAGACCCTCCAGCTGAGGAAACAGGTCTACCACCTCCGCCAACTAC TGAAGCCTTTTCAAACGGAACAGCGTCAGACTACAACTTAAAATCAGCTTTGAAGAACGAAGGCTCACCTCCTAGCAGAAGCCCTAAATCCCGAAATGCA GCTCCACAGGAACACAGCTCAGGCATCCCTCCTATTCCCACCAGCTCCAATCAGTTTTCAGCTCGTGCACGGATGGGCGTTCGAGCAAGATATGTGGATA CATTCAACCAAGGTGGCGGTGGGGGAGCAGCGAATTCATTCCATTCACCGCCCATACCATCCCCTAAACCTCCTATCGCGATGAACACAAAGTTCTTCGT TCCCGCCCCAGCACCTTCTGCTGCTGACAATTCGACAGACACCGCAGCAGACAATGTGCCGTACCCGGGTCACGAAAGCGCTGCATCCACCGAGATTCCT TTGACGTCTTCAATGAACAGTTCGTTCCATACTCCCATGTCCTCTCCTCCTCCACCTATGATGGTCAGGCAGAGGTTTCCGAGCATGGACAACATTCCCG GAGGTAGGTTCGGCTTAAATGACGGTGCACGCTCCCAGTCTCGACGAACAGTATCATGGAGTGGTAGCTTCGACGACTCGTTAAGCTCGCCAAGGGTCAC AGAAATGGCCAAATCGTCCTTAGGTAATCCTCCTACGACTCACATGCCAACGAATAGTGGCAGCTTCGGTGATCTCCAGGAAGTTGAACTTTGA
AA sequence Show only first row Show all	>Lus10004721 pacid=23162944 polypeptide=Lus10004721 locus=Lus10004721.g ID=Lus10004721.BGIv1.0 annot-version=v1.0 MDSNPPFQETEDQIDDDFFDNLVGDDCGAASSSQNKLAMEESDSDEAKAFGNLSIEDSNGVDDGFEEVRNGEELEDVNVEESDAALNNAMDLNNDGTASE AVPDLNPVTDIGSTKSGAKEVGWSSLFSDSSPDGDRHGFGSYSDFFRELGGDTNGSPVKVDGRSVNVEQVTSGELQNSASYEQYQDGTQVHGGYSQESAG VQDVNSTQYWESMYPGWKYDMDTGQWYQVDGYSTAGGVQESYGANLGSEWADASVGKGAVNFLQHSSQSVTGTMTGTSTTENVSTWNQVSQGSNNGYPAH MIFDPQYPGWYYDTIAQEWRSLESYTSSAQSVIPQTQERQSQNGYGFNTNYSQNVSNAYISQGQDISGSDSNRGYNQRDMNMWSAQSASNNNFSQDFGQQ QKFQSSYGSNAFMGSHLDNQQSFSNLGTVPSCEKMQQGQSEANGFLGSHNNFGQGGHFNQQLNQGHSNQIGQMNFSNDFYSSQKPVSFTEQSYQSNQQLS QAPGSGRSSAGRPPHALVSFGFGGKLIVVKDSAFGNSSFGNQAADGGSISVMNLMEAVSGSSTANVSAVGGTSCNYFRPLCQQLFPGPLVGGNAGTKDLN KWIDERIANYESPDMDYRKREALKLLLSLLKIACQHYGKLRSPFGSDTSLRENDTPESAVAKLFSSAKSQLREYGALCHCLQNTPSEAQLQATASAVQNL LVAGRKAEALQFAIEGQLWGPALVLASQLGDQFYVDTVKQMALRQLLPGSPLRTLCLLIAGQPAEVFSSNTRNNGGFFSGAVGTQQPLIPGANSMLDDWE QNLALITANRTKDDELVIIHLGDCLWKDRSEITAAHICYLVAEANFETYSDTARLCLIGADHWKHPRTFANPEAIQRTELYEYSKVLGNSQFILQPFQPY KLVYAYMLAEIGRVSDSLKYCQAVLKSLKTGRAPEVETWKQLVLSLEERIRIHQQGGYGTNLAPAKFVGKLLNFFDSTAHRVVGGLPPPAPLPSSHGLHS NYQEQQMMAPRVAASQSTMAMSTLIPSASMEPISDWVADGNKMGRHSRSVSEPDFGRTPRQAQPADSSPATPAPAPATTTVASTTTATANSQEKPPNPTG GSRLGRFSFGSQLLQKTVGLLLSTRSDKQAKLGEKNKFYYDEKLKRWVEEGVDPPAEETGLPPPPTTEAFSNGTASDYNLKSALKNEGSPPSRSPKSRNA APQEHSSGIPPIPTSSNQFSARARMGVRARYVDTFNQGGGGGAANSFHSPPIPSPKPPIAMNTKFFVPAPAPSAADNSTDTAADNVPYPGHESAASTEIP LTSSMNSSFHTPMSSPPPPMMVRQRFPSMDNIPGGRFGLNDGARSQSRRTVSWSGSFDDSLSSPRVTEMAKSSLGNPPTTHMPTNSGSFGDLQEVEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47490			RGPR-related (.1)		Lus10004721 [exp]	0	1
AT5G47490			RGPR-related (.1)		Lus10008520 [exp]	1.0	0.9641
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10027138 [exp]	1.7	0.9065
AT1G19835			Plant protein of unknown funct...		Lus10024324 [exp]	4.5	0.9163
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10008646 [exp]	6.7	0.8769
AT1G04200			unknown protein		Lus10006619 [exp]	8.0	0.8786
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Lus10035580 [exp]	8.1	0.8878
AT1G61850			phospholipases;galactolipases ...		Lus10018349 [exp]	8.5	0.9047
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10024304 [exp]	9.5	0.8822
AT1G19835			Plant protein of unknown funct...		Lus10024325 [exp]	10.0	0.9025
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10037164 [exp]	11.3	0.8364

Compare expression of checked genes

Lus10004721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.