Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11470 62 / 9e-11 4'-phosphopantetheinyl transferase superfamily (.1.2.3) AT2G02770 51 / 5e-07 4'-phosphopantetheinyl transferase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008521 [exp] 505 / 0 AT3G11470 62 / 2e-10 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10017021 [exp] 66 / 4e-12 AT3G11470 327 / 1e-111 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Lus10021344 [exp] 62 / 6e-11 AT3G11470 349 / 7e-121 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238500 [exp] 355 / 8e-124 AT3G11470 56 / 8e-09 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.016G078400 [exp] 62 / 5e-11 AT3G11470 328 / 8e-113 4'-phosphopantetheinyl transferase superfamily (.1.2.3) Potri.006G211300 [exp] 60 / 3e-10 AT3G11470 345 / 5e-119 4'-phosphopantetheinyl transferase superfamily (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0670 [flax] [poplar] 4PPT PF01648 [flax] [poplar] ACPS 4'-phosphopantetheinyl transferase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004722 pacid=23162927 polypeptide=Lus10004722 locus=Lus10004722.g ID=Lus10004722.BGIv1.0 annot-version=v1.0 ATGGAGAAAGGAGTAAAGAGATGGGTCGTCGACATTTCGAAGTGGAATCCATCTCCCGCCGACTTCTCACTCTCCGTCACTCTCCTTCCCCGCCACGAAC ACTCCTCCATTACCAGGTTTGTGAAGGCGGAAGATAAGAAGAGAGCTCTAGTTAGCCGGTTGCTTCAGTACAGTCTAGTGAACGAAGTCCTCGGAATTCC TTCTGGCAAGATTGTGATCAAGCGCACATTGGAAGGAAAGCCCTATTTGGAATGTGACAGGGTTCAAGCTGGACTTCCAAACTTTAACTTCAATGTTTCC CATCATGGCGACTATGTAGCCATAGCATCTGAGCCTCTGTGTCTAGTTGGGGTCGATATCATTTCATTTACGAAACCGGAATCAGAGACGGTGGGAATGT TCATCCGAGCCTTCAAGTCGTACTTCTCGAGACTCGAATGGGAGAACATCAATAAAGCTGGCAGCCCAGATGAAACTTTGGCCGAGTTCTACAGATACTG GTCCTTGAAGGAAGCATACGTGAAAGCCACAGGCAGCGGATTGGCTAACGAGTTGGACAAAGTAGAGTTCCGACACCATAACTGGGCGAACATAACAATC TCCATCGACGGGAAGCTCGACGAAGAATGGAGATTCTGGTTTCACGAGCTTCCGAAACGACATTGGCTTTCAATTGCAAGAGGCCATCCAAAGGCTGCTG TTGAGAGTTACAGGGCAAAGATAGAACGACGAACAGAGCTTAGTGAAGAGGAGTTCGAAGAGAGCTTTCGACTTCCAAATGTAGGCATCGTTACAAGAAC CGTAGAACAACTCGTTATGAGGCTCCGTGGAGTGGATTCAGAGGGCACAATTCGTTGA
AA sequence Show only first row Show all	>Lus10004722 pacid=23162927 polypeptide=Lus10004722 locus=Lus10004722.g ID=Lus10004722.BGIv1.0 annot-version=v1.0 MEKGVKRWVVDISKWNPSPADFSLSVTLLPRHEHSSITRFVKAEDKKRALVSRLLQYSLVNEVLGIPSGKIVIKRTLEGKPYLECDRVQAGLPNFNFNVS HHGDYVAIASEPLCLVGVDIISFTKPESETVGMFIRAFKSYFSRLEWENINKAGSPDETLAEFYRYWSLKEAYVKATGSGLANELDKVEFRHHNWANITI SIDGKLDEEWRFWFHELPKRHWLSIARGHPKAAVESYRAKIERRTELSEEEFEESFRLPNVGIVTRTVEQLVMRLRGVDSEGTIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11470			4'-phosphopantetheinyl transfe...		Lus10004722 [exp]	0	1
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10011164 [exp]	66.3	0.4369
					Lus10002071 [exp]	127.6	0.3877
					Lus10028981 [exp]	145.7	0.3739

Compare expression of checked genes

Lus10004722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.