Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 414 / 4e-147 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 413 / 1e-146 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT5G57530 358 / 5e-125 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT4G25810 357 / 1e-124 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57540 355 / 1e-123 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G30270 352 / 6e-123 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT4G25820 349 / 2e-121 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1) AT5G57560 347 / 9e-121 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57550 346 / 2e-120 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT2G18800 325 / 8e-112 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008522 [exp] 548 / 0 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 421 / 1e-149 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10000678 [exp] 409 / 5e-145 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10021638 [exp] 403 / 9e-143 AT3G23730 413 / 7e-147 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 358 / 5e-125 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10023221 [exp] 356 / 4e-124 AT3G23730 376 / 4e-132 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 355 / 7e-124 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 355 / 1e-123 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031392 [exp] 354 / 1e-123 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 425 / 2e-151 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 419 / 6e-149 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201250 [exp] 399 / 3e-141 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 397 / 2e-140 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 393 / 1e-138 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 387 / 2e-136 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.013G005700 [exp] 378 / 5e-132 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.011G077320 [exp] 373 / 8e-131 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.018G095100 [exp] 366 / 2e-128 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 362 / 1e-126 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10004723 pacid=23162949 polypeptide=Lus10004723 locus=Lus10004723.g ID=Lus10004723.BGIv1.0 annot-version=v1.0 ATGGGAACTTTCTCTACTCAAAGTCTGGTGCTTTGTGCTCTGGTTCTGACGGTGATCGGAGCCACCGCTGCCAATGGCGGAAGCTTCTACGATGATTTCG ATCTAACGTGGGGAGGACCACGGTCCAAGATTTTCGGAGGTGGCCAGATGTTGTCTCTGTCTCTGGACAAGGCGTCCGGGTCTGGGTTCCAGTCCAAGAA GGAGTACTTGTTCGGGAGGATCGACATGCAGCTTAAGCTCGTCGCCGGTAACTCGGCCGGCACCGTCACTGCTTACTACTTATCGTCACAGGGTCCGACC CACGACGAAATCGATTTTGAGTTTTTGGGGAATTCGAGCGGGGACCCGTATATTTTGCACACGAACGTGTTCGCTCTAGGGAAAGGAGGCAAAGAGCAAC AGTTCTATCTCTGGTTCGATCCGACGAGGAACTTCCACACGTATTCCATCGTGTGGAAGCCTCAACACATCATTTTTTTGGTGGACAACACTCCGATCAG GGTGTTCAACAACGCGGAAAACCGAGGGGTGGCGTTCCCCAAAAATCAGCCGATGAGGATCTACTCGAGCCTGTGGAATGCGGATGACTGGGCGACCCGG GGCGGGCTGGTCAAGACCGACTGGTCAAAGGCTCCATTCACTGCTTACTACAGGAACTTCAGAGTCACTACAGCTAATGCTTCCCCTGCTTCTTCTTCTT CTTCCTCTGGCTCGTTTGGCAATGGAGATTGGCAGTGGAAGAACAACAATGGTGATCAGTTGGATGCTAACTCAAGGAGGAGGCTGAGATGGGTTCAGAA GAACTTCATGATTTATAATTATTGTACTGATTTCAAACGGTTCCCTCAGGGGCTTCCTACTGAGTGTAAATGA
AA sequence Show only first row Show all	>Lus10004723 pacid=23162949 polypeptide=Lus10004723 locus=Lus10004723.g ID=Lus10004723.BGIv1.0 annot-version=v1.0 MGTFSTQSLVLCALVLTVIGATAANGGSFYDDFDLTWGGPRSKIFGGGQMLSLSLDKASGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPT HDEIDFEFLGNSSGDPYILHTNVFALGKGGKEQQFYLWFDPTRNFHTYSIVWKPQHIIFLVDNTPIRVFNNAENRGVAFPKNQPMRIYSSLWNADDWATR GGLVKTDWSKAPFTAYYRNFRVTTANASPASSSSSSGSFGNGDWQWKNNNGDQLDANSRRRLRWVQKNFMIYNYCTDFKRFPQGLPTECK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10004723 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	5.4	0.7807
AT3G07470			Protein of unknown function, D...		Lus10029538 [exp]	11.2	0.7703
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	12.8	0.7694
AT4G23690			Disease resistance-responsive ...		Lus10017538 [exp]	13.6	0.7607
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037456 [exp]	19.4	0.7490
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	20.1	0.7613
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	27.7	0.7510
AT4G32530			ATPase, F0/V0 complex, subunit...		Lus10000347 [exp]	28.3	0.7225
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	30.5	0.7500
AT1G45688			unknown protein		Lus10010232 [exp]	30.6	0.7419

Compare expression of checked genes

Lus10004723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.