Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60580 84 / 8e-19 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G45120 74 / 8e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G02030 67 / 1e-12 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G53600 56 / 3e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G16610 55 / 7e-09 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G37430 52 / 7e-08 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G26610 50 / 8e-07 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28710 45 / 1e-05 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G61470 45 / 3e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G49900 45 / 3e-05 C2H2ZnF C2H2 type zinc finger transcription factor family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008523 [exp] 395 / 2e-139 AT3G60580 107 / 3e-27 C2H2-like zinc finger protein (.1) Lus10028951 [exp] 186 / 1e-56 AT3G60580 117 / 1e-30 C2H2-like zinc finger protein (.1) Lus10007474 [exp] 149 / 1e-42 AT3G60580 99 / 7e-24 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 63 / 6e-11 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10037095 [exp] 60 / 7e-10 AT1G26610 229 / 6e-70 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 56 / 9e-09 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10021637 [exp] 56 / 1e-08 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10036890 [exp] 53 / 2e-08 AT1G26610 82 / 5e-19 C2H2-like zinc finger protein (.1) Lus10000679 [exp] 55 / 4e-08 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077200 [exp] 152 / 1e-43 AT3G60580 151 / 2e-43 C2H2-like zinc finger protein (.1) Potri.001G157700 [exp] 146 / 1e-41 AT3G60580 159 / 2e-46 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 104 / 1e-25 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 102 / 1e-24 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.001G125900 [exp] 84 / 2e-18 AT3G60580 98 / 1e-23 C2H2-like zinc finger protein (.1) Potri.008G094500 [exp] 61 / 2e-10 AT1G26610 223 / 3e-67 C2H2-like zinc finger protein (.1) Potri.010G159600 [exp] 57 / 6e-09 AT1G26610 298 / 6e-96 C2H2-like zinc finger protein (.1) Potri.008G032300 [exp] 46 / 1e-05 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.014G017300 [exp] 46 / 1e-05 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.017G091800 [exp] 46 / 2e-05 AT5G67450 77 / 9e-16 zinc-finger protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004724 pacid=23162966 polypeptide=Lus10004724 locus=Lus10004724.g ID=Lus10004724.BGIv1.0 annot-version=v1.0 ATGGAGGAGAAGAAGAAGAATCACAAATGCAAGCTCTGTTTCAGAATCTTCCCCACCTCCAGATCCTTAACCGGCCACATGATGAGATCCCACCACCACC AACTCGGCAGCGGTGATGACTCCTCGTCATACGCCTCCGAGTCGTATCTGTCGACTGAGGTCGAGCTGGAAGAAGTAGCTTACGAGCTGCGGCGGAATCC GAGGAAGAGCTTCCGAGTCGCAGCGGATCCTGACTCGGCCGAGAGCGAAACTGAGTCGCCTCAGAACCTGAATCGGCGGCGCTCCCAACGGACTCGGAAA CTGAGTGAGAAGAAACGCCAACGGGGCTGGGTTTCCGATTCTCCGCCGGCGAGCTCTGTTTCCGACGCTTTCCCAGAAGAAGAAGTGGCGATGTTTCTGG TGATGATGTCGAGAGATGTGAATTGGAGGAAGAGGAGTACAAGATTCAGCAACGACGATGAGGACGACGCAATTGAAGTGCGAGAAATTAAAATCGCGAA GAAGGAAGATGAAGAAGTTCGAGAGAGATCAAATTCAAGGGTTCGAAGAGGGATCAACAAATTGAAGTGCGAGAAATGTACGAAACAGTTCCGATCCTCA CCGGCATTGACGACCCACCGCCGAATCTGCTCTCTCAACACCGACAACGGCGGAGCCAACGCGGCGGCGGCGGAGAGGAGGAGGATTTTCCGGTGTCCGT ACTGCTACAAGGTGTTCGGATCGGGTCAAGCACTGGGCGGACACAAAAGATCGCATCTTTCTTCCACCACCGGCTCTTACCCTTCTCCGGTGGCGCAGCC GCCTGTGAAAAGCAGCGGCGGTCTCTTGGATCTCAACTTTCCGCCGGCTGCAACGGAAGACGACGACTACAGCGTGGTCTCCGACGCTTAA
AA sequence Show only first row Show all	>Lus10004724 pacid=23162966 polypeptide=Lus10004724 locus=Lus10004724.g ID=Lus10004724.BGIv1.0 annot-version=v1.0 MEEKKKNHKCKLCFRIFPTSRSLTGHMMRSHHHQLGSGDDSSSYASESYLSTEVELEEVAYELRRNPRKSFRVAADPDSAESETESPQNLNRRRSQRTRK LSEKKRQRGWVSDSPPASSVSDAFPEEEVAMFLVMMSRDVNWRKRSTRFSNDDEDDAIEVREIKIAKKEDEEVRERSNSRVRRGINKLKCEKCTKQFRSS PALTTHRRICSLNTDNGGANAAAAERRRIFRCPYCYKVFGSGQALGGHKRSHLSSTTGSYPSPVAQPPVKSSGGLLDLNFPPAATEDDDYSVVSDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	0	1
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	2.8	0.8744
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	3.0	0.8704
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	3.3	0.8940
AT5G42660			Protein of unknown function (D...		Lus10024684 [exp]	6.9	0.8598
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	7.0	0.8581
AT2G19580		TET2	tetraspanin2 (.1)		Lus10040551 [exp]	9.4	0.8487
AT2G46150			Late embryogenesis abundant (L...		Lus10036403 [exp]	10.0	0.8323
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	10.1	0.8422
AT4G01200			Calcium-dependent lipid-bindin...		Lus10008731 [exp]	10.4	0.8321
AT2G20830			transferases;folic acid bindin...		Lus10039788 [exp]	10.6	0.8071

Compare expression of checked genes

Lus10004724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.