Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47470 398 / 2e-138 Nodulin MtN21 /EamA-like transporter family protein (.1) AT4G16620 288 / 3e-95 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 131 / 9e-35 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 125 / 2e-32 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 124 / 2e-32 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 124 / 5e-32 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 121 / 5e-31 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 120 / 9e-31 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G30420 118 / 4e-30 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 116 / 3e-29 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000330 [exp] 631 / 0 AT5G47470 429 / 1e-150 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007475 [exp] 496 / 2e-177 AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028952 [exp] 494 / 2e-176 AT5G47470 449 / 1e-158 Nodulin MtN21 /EamA-like transporter family protein (.1) Lus10040311 [exp] 135 / 3e-36 AT2G39510 482 / 2e-171 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023432 [exp] 135 / 4e-36 AT2G39510 480 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10005965 [exp] 125 / 1e-32 AT2G39510 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029465 [exp] 124 / 4e-32 AT2G39510 456 / 1e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 121 / 3e-31 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 121 / 4e-31 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157600 [exp] 444 / 1e-156 AT5G47470 442 / 6e-156 Nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G077300 [exp] 439 / 8e-155 AT5G47470 431 / 1e-151 Nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 141 / 1e-38 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.007G017800 [exp] 141 / 1e-38 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G073200 [exp] 138 / 1e-37 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.010G209200 [exp] 136 / 9e-37 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 132 / 2e-35 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 129 / 5e-34 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 128 / 1e-33 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.006G033500 [exp] 128 / 2e-33 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10004725 pacid=23162934 polypeptide=Lus10004725 locus=Lus10004725.g ID=Lus10004725.BGIv1.0 annot-version=v1.0 ATGACAATATCGTCGATTCTGGGTCTGAAGAAGGAGATATTGGAAGATCTGGCAATAGCCGGAGGACTAATTGGGGTGCAATTTGTGTATGCTGGGAATT CAGTCTTGTTGAGTTATTTGATGTCGATTGGCCTTAACTCTCTCACCATTGTCATCTTCTCAACTTTTGCAACCTTCCTCATCATCTCCCCTTTTGCACT CTACTTCGAACGGAAGAAATGGCCGAAAAGGCTCAATTTCAAGCTTGTAACCCAGTTGGTTCTCATTTCTTTCGGAGGAGTTACACTATTCCAATCTTTT TTCCTCAAGGGAATCAAACTCACTTCTCCAGCTCTTGCAACAGCCATGCCAAACCTCGCCCCTGGCTTCATTTTCATCATTGCTTGGACACTAAGGCTGG AGAGAGTTAGGATTGGGTGCATATACAGCAAGGTGAAGATCATGGGAACATTGTTGTGTGTGGTTGGTGCCTTGACAATGAGCCTAATGCACAGTAGATC GGCCAAAGAGGCCGGGAGCTTCATTTCTTTTCCTAGCGATATCTCCATCGACATGGACAAGTTGGTTGGCTGTACGTACCTCGTGGCTGCTGTTCTTGTT CTCTCGAGCAATGTCGTATTACAAGCAGCAACACTGGGTGATTTTCCGGCACCAATGTCGTTATGCGCCATAACATCATTGATTGGTGTGCTGATAACTG CAATTGTTCAGCTTGTTCAACATCAAACATGGGATGTCTTCTTCCCTCATGTGCACACCGGTGACCTTCTCGGCTACTCCTTACTGGGCGGTGCGGTAGG GGGAGCATGTGTGAGCTTCAATGGATGGGCAATGAAGAAGAGAGGACCAGTCCTTGTCTCAATGTTCAGCCCCATCGGAACTGTCATCTCAGTTGTTCTC TCAGTCATCACATTAGGAGACACCATCAACATAGGAAGCCTTTCTGGGATGTTGCTGATGTTCACTGGTCTCTACTTCTTCCTGTGGGCTAAAGGGAAAG AAAGTTACTTGACTGAAGATCCTCTGGAAATTAGCAGTGATGAGTTTGATATGCATAAGCCTTTACTAAGCTGA
AA sequence Show only first row Show all	>Lus10004725 pacid=23162934 polypeptide=Lus10004725 locus=Lus10004725.g ID=Lus10004725.BGIv1.0 annot-version=v1.0 MTISSILGLKKEILEDLAIAGGLIGVQFVYAGNSVLLSYLMSIGLNSLTIVIFSTFATFLIISPFALYFERKKWPKRLNFKLVTQLVLISFGGVTLFQSF FLKGIKLTSPALATAMPNLAPGFIFIIAWTLRLERVRIGCIYSKVKIMGTLLCVVGALTMSLMHSRSAKEAGSFISFPSDISIDMDKLVGCTYLVAAVLV LSSNVVLQAATLGDFPAPMSLCAITSLIGVLITAIVQLVQHQTWDVFFPHVHTGDLLGYSLLGGAVGGACVSFNGWAMKKRGPVLVSMFSPIGTVISVVL SVITLGDTINIGSLSGMLLMFTGLYFFLWAKGKESYLTEDPLEISSDEFDMHKPLLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47470			Nodulin MtN21 /EamA-like trans...		Lus10004725 [exp]	0	1

Compare expression of checked genes

Lus10004725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.