Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16640 342 / 4e-116 Matrixin family protein (.1) AT2G45040 318 / 4e-107 Matrixin family protein (.1) AT1G70170 261 / 2e-84 MMP matrix metalloproteinase (.1) AT1G24140 256 / 2e-82 Matrixin family protein (.1) AT1G59970 246 / 5e-79 Matrixin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028955 [exp] 443 / 9e-156 AT4G16640 360 / 3e-123 Matrixin family protein (.1) Lus10007478 [exp] 441 / 6e-155 AT4G16640 345 / 2e-117 Matrixin family protein (.1) Lus10030662 [exp] 252 / 5e-81 AT1G59970 338 / 9e-115 Matrixin family protein (.1) Lus10028180 [exp] 248 / 3e-80 AT2G45040 278 / 9e-93 Matrixin family protein (.1) Lus10005605 [exp] 199 / 1e-61 AT1G24140 223 / 9e-71 Matrixin family protein (.1) Lus10010719 [exp] 200 / 3e-61 AT1G70170 305 / 3e-102 matrix metalloproteinase (.1) Lus10039464 [exp] 196 / 5e-60 AT1G24140 224 / 3e-71 Matrixin family protein (.1) Lus10014512 [exp] 184 / 2e-55 AT1G59970 221 / 6e-70 Matrixin family protein (.1) Lus10032175 [exp] 184 / 3e-55 AT1G59970 224 / 3e-71 Matrixin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157500 [exp] 409 / 2e-142 AT2G45040 349 / 2e-119 Matrixin family protein (.1) Potri.003G077400 [exp] 404 / 6e-139 AT2G45040 330 / 1e-110 Matrixin family protein (.1) Potri.014G058200 [exp] 338 / 8e-115 AT2G45040 358 / 3e-123 Matrixin family protein (.1) Potri.015G103900 [exp] 292 / 2e-96 AT1G24140 381 / 3e-131 Matrixin family protein (.1) Potri.012G104600 [exp] 287 / 1e-94 AT1G24140 393 / 5e-136 Matrixin family protein (.1) Potri.013G100400 [exp] 227 / 4e-72 AT1G59970 247 / 4e-80 Matrixin family protein (.1) Potri.008G027600 [exp] 208 / 1e-64 AT1G59970 213 / 8e-67 Matrixin family protein (.1) Potri.019G073800 [exp] 194 / 3e-59 AT1G70170 223 / 1e-70 matrix metalloproteinase (.1) Potri.019G073700 [exp] 193 / 7e-59 AT1G59970 213 / 7e-67 Matrixin family protein (.1) Potri.013G033200 [exp] 193 / 9e-59 AT1G24140 246 / 2e-79 Matrixin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0244 [flax] [poplar] PGBD PF01471 [flax] [poplar] PG_binding_1 Putative peptidoglycan binding domain CL0126 [flax] [poplar] Peptidase_MA PF00413 [flax] [poplar] Peptidase_M10 Matrixin
Representative CDS sequence Show only first row Show all	>Lus10004728 pacid=23162925 polypeptide=Lus10004728 locus=Lus10004728.g ID=Lus10004728.BGIv1.0 annot-version=v1.0 ATGATTCAAATTTTCAGTTGTTTCCGTTACTCCTTCCCTTTCTTCCTCCTCTGTCTTTCCCGCCTTTCCTTGATTCCCGCCAGAATCATTCCTAACGACG CCGTCATTACTCCTCCTCCCGCCACGTGGCATAACTTTGTACGGCTAATAGACGCCGGGAAAGGCAGCGAGCTTACCGGCGTGGCAGACCTCAAGCGCTA CTTCCACCGTTTCGGCTACCTTGATGATAAAGAGGATTCCAATAGGTTCGCTAATTTAAATGGCTCGAATAATTTCACCGATTTGTTCGACGGCCGATTG GAATCGGCCGTCGTCTCCTACCAGAGAAACCTCGGATTGCACGTCACGGGGAAGTTGGATTCCGACACGGTGGAGGCCATCATGTTGCCGAGGTGCGGCG TCCCAGACATACCTCCGGACAGGTCGTCGGCGGTGACGAAGCGGTTTGCGTACTTCTCCGGCCGGCCACAGTGGCGGCGGGGCGATTCGACGATGACGCT GACATACGCCTTCTCGCCGGGGCACATGGTCCGGTACATAAGCGCGAAGGAGGTTCGAAGAGTTTTTCAGCGGGCGTTCGCGCGGTGGTCGGCGGTGATT CCGGTGGCCTTCCGGGAGTGGGAGGACTACCGATCGGCGGACATCCGGATCGGGTGGTACCGCGGGGACCACGGGGACGGGGAGCCTTTCGACGGGGTTT TGGGAGTTTTGGCCCACGCGTTCTCGCCGGAGAACGGGCGGCTACACCTTGACGCGGCGGAGACGTGGGTGGCGACAGCGGAGGATTTCGATACCGTAGC GTCGAGGGCGGCCGTGGATCTGGAGTCGGTGGCGACTCACGAGATAGGGCACGTGCTGGGGCTAGCACACAGCTCGATCAAGGACGCGGTGATGTACCCG AGCCTCAGCCCCAGGACTAAAAAAGTAGACCTTCGTGTTGATGACGTGGAAGGCGTCCAAGCGCTTTACGGGTCGAATCCGGATTTCCGGTTCGATTCGT TGTTGACAATCGAAAACAATTCTAACTCGAAAAGTACAAGTAATACGGTTCGATCTTCGTTGAATATGACCCATTTTGTTTTGGTGGTCGGACTCTTCGG GCTGCTCCTGTCATGTATATAG
AA sequence Show only first row Show all	>Lus10004728 pacid=23162925 polypeptide=Lus10004728 locus=Lus10004728.g ID=Lus10004728.BGIv1.0 annot-version=v1.0 MIQIFSCFRYSFPFFLLCLSRLSLIPARIIPNDAVITPPPATWHNFVRLIDAGKGSELTGVADLKRYFHRFGYLDDKEDSNRFANLNGSNNFTDLFDGRL ESAVVSYQRNLGLHVTGKLDSDTVEAIMLPRCGVPDIPPDRSSAVTKRFAYFSGRPQWRRGDSTMTLTYAFSPGHMVRYISAKEVRRVFQRAFARWSAVI PVAFREWEDYRSADIRIGWYRGDHGDGEPFDGVLGVLAHAFSPENGRLHLDAAETWVATAEDFDTVASRAAVDLESVATHEIGHVLGLAHSSIKDAVMYP SLSPRTKKVDLRVDDVEGVQALYGSNPDFRFDSLLTIENNSNSKSTSNTVRSSLNMTHFVLVVGLFGLLLSCI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16640			Matrixin family protein (.1)		Lus10004728 [exp]	0	1
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	4.2	0.9255
AT1G60360			RING/U-box superfamily protein...		Lus10025612 [exp]	6.9	0.9211
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	7.3	0.9208
					Lus10015565 [exp]	7.9	0.9113
AT5G22870			Late embryogenesis abundant (L...		Lus10041350 [exp]	9.4	0.9137
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	10.2	0.9157
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	11.0	0.9050
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	13.6	0.9153
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	13.7	0.9164
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	14.0	0.8998

Compare expression of checked genes

Lus10004728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.