Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16650 743 / 0 O-fucosyltransferase family protein (.1) AT4G38390 509 / 6e-176 RHS17 root hair specific 17 (.1) AT1G76270 508 / 3e-175 O-fucosyltransferase family protein (.1) AT1G20550 497 / 4e-171 O-fucosyltransferase family protein (.1) AT1G14970 317 / 4e-101 O-fucosyltransferase family protein (.1) AT2G01480 310 / 2e-98 O-fucosyltransferase family protein (.1) AT2G03280 278 / 4e-87 O-fucosyltransferase family protein (.1.2) AT1G14020 278 / 6e-87 O-fucosyltransferase family protein (.1) AT2G37980 282 / 8e-87 O-fucosyltransferase family protein (.1) AT1G38065 274 / 1e-85 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007792 [exp] 1025 / 0 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 909 / 0 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 900 / 0 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10030754 [exp] 518 / 4e-179 AT1G76270 787 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 517 / 1e-178 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 496 / 2e-170 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 495 / 3e-170 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10014444 [exp] 459 / 1e-156 AT1G20550 650 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 310 / 3e-98 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077500 [exp] 791 / 0 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 776 / 0 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 517 / 9e-179 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 516 / 9e-179 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G183200 [exp] 509 / 2e-175 AT1G76270 713 / 0.0 O-fucosyltransferase family protein (.1) Potri.009G143100 [exp] 506 / 2e-174 AT1G76270 699 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 313 / 2e-99 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 308 / 1e-97 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 282 / 2e-88 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 281 / 3e-88 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10004729 pacid=23162931 polypeptide=Lus10004729 locus=Lus10004729.g ID=Lus10004729.BGIv1.0 annot-version=v1.0 ATGGGAGCGGGAGCGGCGGCTCAGGAGGAGGCGTCAAGGTTTAGCTCGATTCCGTCGAACCTGGCGCTGTTACAGCAACCAAACGGTAAAGTGAGCGGAG GAGGAAAGGTTCAGAGTAAGAGTAGCTATCATCATCATCATCACAAGCAGCATAATGCTTTGTGCTGGTGGAAGAGATCCTCTGTAGCCCAGTCGCTGAT GCTGCAGCGGAGGAAGATCCGGTGGTCGTTGGTATGCGGTTTGATGCTGTTCGGGCTCGGGATGGTGTCGCTCTTCACCGGACACATGGTCGCCGATCTC GATTGGTACTCTCAGCGGCTCGTCAAGCCGAGCATCTACAACACATTTAACGCGATTCGTCGTGAGCCTGTTGATATATGGAAATCGAAGTACTCGAATA TGTTCTACGGATGCAGCGAAAGAGGCCGTACTTATGCTCCTGTTACGCCTGAACCGGCATCAAATGGATATCTTCTTATAGCAGCAAGTGGTGGACTTAA CCAAGAAAGGACAGGAATCATAGATGCTGTAGTTGTTGCAAGGTTTCTTAATGCAACACTAGTTGTTCCTGAGTTGGATCACCATTCTTATTGGAAGGAT GATAGTGATTTTGTTGACATATTCGATGTTGATTGGTTCATCTCTTACCTCGCAAAAGACGTCACAATTGTTAAAAGAGTTCCGGATAAGTTTATGCGAT CAATGGATAAGCCTCCTTATACAATGCGGGTGCCAAGAAAGTCCCCACCGGAGTACTATATGGACCAAGTTCTACCTATATTATTGAGGAGACAAGTTCT GCAGTTGACTAAGTTCGATTATCGGCTTGTCTATGAGCTTGATGAACAGCTGCAGAAGCTACGCTGCCGGGTTAACTATCATGCTTTAAGATTCACAAAG CCAATACGTGACGTTGGTCAAGAAATTGTTATGAAGATGAAAACAATGGCCACACACTTTATCGCTATTCACTTGAGGTTTGAACCTGATATGCTGGCGT TCTCCGGATGCTACTTCGGAGGAGGTGACAAAGAGCGATACGAGCTCAGCGAAATAAGGAAAAGATGGGACACATTGCCGGAGCTAAGTCCGGAAGACGA ACGAGCGAGAGGGAAATGTCCGCTTACTCCTCACGAAGTAGGACTGATGCTGCGTGCATTGGGGTTCGCTAACGACACGTACCTCTTTGTTGCATCTGGA GAAATATATGGGGGAGAAGAAACATTGCGGCCACTGAAAGAACTATTCCCTAACTTCTACACCAAAGAAATGCTTGCTAACGAAGAGCTCAAGCCTTTTC TTCCTTACTCTTCCCGCTTGGCTGCCATAGACTACATTGTCTGCCACGAGAGTGATGTCTTCGTCACGAACAACAACGGGAACATGGCAAAGATTCTCGC AGGACAAAGGCGGTACGCGGGGCACAAGAGGACCATCCGCCCAAACGCAAAAAAGCTTAGCACATTGTTCCTGAGACGACACAAAATGGACTGGAACACC TTCTCCAGGAAGGTGAAATCATGCCAGAGAGGGTTCATGGGCGAACCGGACGATCCGAAACCCGCTCGAGGCGAGTTTTACGAACACCCTGCATCGTGCA TCTGCAAGAAGCCATTCACCGAGGATGACAGTAACCTTAGAGGGCAAGAAGCTTCTTACTCACGTAACAGATCTTCTCTTAACCCAAGGACATCAAAGGT GACACCAAATAGGTGA
AA sequence Show only first row Show all	>Lus10004729 pacid=23162931 polypeptide=Lus10004729 locus=Lus10004729.g ID=Lus10004729.BGIv1.0 annot-version=v1.0 MGAGAAAQEEASRFSSIPSNLALLQQPNGKVSGGGKVQSKSSYHHHHHKQHNALCWWKRSSVAQSLMLQRRKIRWSLVCGLMLFGLGMVSLFTGHMVADL DWYSQRLVKPSIYNTFNAIRREPVDIWKSKYSNMFYGCSERGRTYAPVTPEPASNGYLLIAASGGLNQERTGIIDAVVVARFLNATLVVPELDHHSYWKD DSDFVDIFDVDWFISYLAKDVTIVKRVPDKFMRSMDKPPYTMRVPRKSPPEYYMDQVLPILLRRQVLQLTKFDYRLVYELDEQLQKLRCRVNYHALRFTK PIRDVGQEIVMKMKTMATHFIAIHLRFEPDMLAFSGCYFGGGDKERYELSEIRKRWDTLPELSPEDERARGKCPLTPHEVGLMLRALGFANDTYLFVASG EIYGGEETLRPLKELFPNFYTKEMLANEELKPFLPYSSRLAAIDYIVCHESDVFVTNNNGNMAKILAGQRRYAGHKRTIRPNAKKLSTLFLRRHKMDWNT FSRKVKSCQRGFMGEPDDPKPARGEFYEHPASCICKKPFTEDDSNLRGQEASYSRNRSSLNPRTSKVTPNR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	0	1
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	2.2	0.8518
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	4.5	0.8463
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	4.9	0.8326
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	8.7	0.8299
					Lus10033414 [exp]	11.0	0.8028
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Lus10001783 [exp]	13.3	0.7809
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	13.6	0.8087
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	14.3	0.8174
AT5G08200			peptidoglycan-binding LysM dom...		Lus10040979 [exp]	14.4	0.7960
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Lus10017641 [exp]	14.7	0.8221

Compare expression of checked genes

Lus10004729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.