Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67530 777 / 0 ATPUB49 plant U-box 49 (.1) AT1G01940 164 / 1e-47 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G36130 137 / 1e-37 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 140 / 4e-35 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT4G33060 120 / 6e-29 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G63400 110 / 8e-26 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT5G13120 105 / 2e-25 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G56070 102 / 4e-25 ROC2 rotamase cyclophilin 2 (.1.2) AT4G38740 100 / 4e-24 ROC1 rotamase CYP 1 (.1) AT2G15790 103 / 8e-24 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007794 [exp] 924 / 0 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10009237 [exp] 164 / 3e-47 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10020573 [exp] 137 / 6e-34 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 136 / 9e-34 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10017010 [exp] 126 / 2e-33 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 125 / 2e-33 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10024999 [exp] 124 / 1e-29 AT4G33060 344 / 9e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10018746 [exp] 114 / 3e-26 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10024831 [exp] 114 / 3e-26 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148900 [exp] 801 / 0 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.002G149700 [exp] 166 / 2e-48 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 164 / 2e-47 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 135 / 3e-37 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 138 / 2e-34 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.018G061700 [exp] 122 / 3e-29 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G106200 [exp] 110 / 4e-26 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.019G014396 [exp] 100 / 2e-24 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G135500 [exp] 103 / 7e-24 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 103 / 7e-24 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04641 [flax] [poplar] Rtf2 Rtf2 RING-finger CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10004731 pacid=23162945 polypeptide=Lus10004731 locus=Lus10004731.g ID=Lus10004731.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGCAGCACAGCAAGGACCGGATGTTCATAACGAGAACGGAGTGGGCGACGGAGTGGGGTGGCGCCAAGTCCAGAGAGCTCCGTACTCCTT TCAAGCGCCTCCCCTTCTATTGCTGCGCGCTAACGTTTACTCCGTTTGCTACTCCAGTGTGCACGGCTGACGGCAGCATCTTCGAGATAATGTATATAAT TCCTTATATAGTGAAGTATGGGAAGCATCCGGTTACAGGAGCTCCATTGAAGCAGGAAGATCTTATCCCACTGAACTTCCACAAGAACTCTGAAGAAGAG TTCCATTGTCCGGTGCTCAACAAAGTTTTTACAGAGTTTACACATATATTAGCCGTCAAGACTACTGGCAATGTATTTTGCTACGAGGCAGTGAAAGAAT TAAATATCAAAACCAAAAACTGGAAGGATCTCCTCACCGACGAACCTTTCACTAGAAATGATCTAATAACACTGCAGAATCCTAATGCTCTCGACTCTAG AGTCACTGTGGAGTTTGACCATGTTAAGAATGACTTGAAGATAGACGATGAAGAGTTGAAGAAGATGACTTCAGACCCAGCTTATAACATAAACGTAACT GGTGACATCAAGCAAATGCTAGACGAACTTGGAACTGACAAAGCAAAAGAAGCTGCACTTCATGGAGGTGGTGGTAGCAAGGCACGAAATGAGAGAGCAG CTGCTCTTGCTGCGATTTTGGCTGCGAGATCACGAATCAAAGACGACTCAAAATCGAAATCCAAAGATAAGGCTAAACCTCCAACTGGTTTCAGTGTCGT TGATGCTGCCTCTGCTGCTGTACACGGGAGAAGTGCTGCGGCAGCAAGAGCTTCGTCAACTGATAAGACAGTTGCTCGGATAGCCATGCATCAGGCCGGT GAAAGGGCACCTGTCAATGCTAAGCTGGTGAAGAGTCGTTACACCACCGGTGCCGCGTCTCGATCTTTCACTTCCACTTCTTTCACTCCCGTGACCGAGA ACGAGTACGAATATGTCAAGGTCGAGAGGAACCCGAAAAAGAAAGGTTATGTTAAGTTGCATACGACACATGGTGATCTCAACATCGAGCTGCATTGTGA TATCACTCCAAGGGCATGTGAGAACTTCATAACACTGTGTGAACAAGGCTACTATAACGGAGTAGTCTTCCATAGAAGCATACGGAATTTCATGATTCAG GGCGGTGATCCTACAGGCACCGGGAGAGGTGGCGAATCCATATGGGGCCAACCGTTCAACGACGAGCTAAACTCCAAACTGGTCCATTCCGGGAGAGGCG TTGTTAGCATGGCGAATAACGGCGCCCACACAAACGGATCCCAGTTCTTCATACTCTACAAGTCTGCTAATCACTTGAACTTCAAGCATACTGTTTTTGG GAATGTTGTTGGTGGGTTGACTGCTTTGGCAGCCATGGAGAAAGTTCCTGTGGACGATAATGACCGACCTCTGGAAGAAATCAAGATAACTAAAGTGACT GTTTTCGTGAACCCCTACACCGAACCTGACGAAGAAGAACAAGAGAAGGCCAAAGCCGAGGAGGAAGCCAACGACGTAGATAAGGACAAGGTTGGTTCGT GGTACAGCAATCCAGGCACAGGGGCGACGGACTCCGAAGCTGGAAATGGTACCGTAGGGAAGTACTTGAAACCAAGGAATGCTGCTGCTGCACAAACCGA ATCGGCTGCTGACCTGAGTAGTGTATCGGTTGGGAAGAAGAGGAAAGTTGGTGGTTCAGCTGTAGAGTTCAAAGACTTCTCCGGTTGGTAG
AA sequence Show only first row Show all	>Lus10004731 pacid=23162945 polypeptide=Lus10004731 locus=Lus10004731.g ID=Lus10004731.BGIv1.0 annot-version=v1.0 MGKKQHSKDRMFITRTEWATEWGGAKSRELRTPFKRLPFYCCALTFTPFATPVCTADGSIFEIMYIIPYIVKYGKHPVTGAPLKQEDLIPLNFHKNSEEE FHCPVLNKVFTEFTHILAVKTTGNVFCYEAVKELNIKTKNWKDLLTDEPFTRNDLITLQNPNALDSRVTVEFDHVKNDLKIDDEELKKMTSDPAYNINVT GDIKQMLDELGTDKAKEAALHGGGGSKARNERAAALAAILAARSRIKDDSKSKSKDKAKPPTGFSVVDAASAAVHGRSAAAARASSTDKTVARIAMHQAG ERAPVNAKLVKSRYTTGAASRSFTSTSFTPVTENEYEYVKVERNPKKKGYVKLHTTHGDLNIELHCDITPRACENFITLCEQGYYNGVVFHRSIRNFMIQ GGDPTGTGRGGESIWGQPFNDELNSKLVHSGRGVVSMANNGAHTNGSQFFILYKSANHLNFKHTVFGNVVGGLTALAAMEKVPVDDNDRPLEEIKITKVT VFVNPYTEPDEEEQEKAKAEEEANDVDKDKVGSWYSNPGTGATDSEAGNGTVGKYLKPRNAAAAQTESAADLSSVSVGKKRKVGGSAVEFKDFSGW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67530		ATPUB49	plant U-box 49 (.1)		Lus10004731 [exp]	0	1
AT1G36990			unknown protein		Lus10028037 [exp]	1.4	0.9185
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	4.7	0.9018
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Lus10004250 [exp]	5.5	0.8912
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10032200 [exp]	6.7	0.9000
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10028187 [exp]	8.9	0.8942
AT4G02120			CTP synthase family protein (....		Lus10025043 [exp]	9.9	0.8851
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10021253 [exp]	11.0	0.8971
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	11.5	0.8909
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10029168 [exp]	14.1	0.8875
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	15.0	0.8775

Compare expression of checked genes

Lus10004731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.