Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47380 322 / 1e-102 Protein of unknown function, DUF547 (.1) AT5G66600 126 / 1e-30 Protein of unknown function, DUF547 (.1.2.3.4) AT3G13000 111 / 1e-25 Protein of unknown function, DUF547 (.1.2) AT2G23700 105 / 2e-23 Protein of unknown function, DUF547 (.1) AT1G16750 101 / 1e-22 Protein of unknown function, DUF547 (.1) AT3G18900 97 / 6e-21 unknown protein AT1G76620 90 / 6e-19 Protein of unknown function, DUF547 (.1) AT3G12540 85 / 3e-17 Protein of unknown function, DUF547 (.1) AT5G42690 83 / 1e-16 Protein of unknown function, DUF547 (.1.2.3) AT1G21060 82 / 2e-16 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007795 [exp] 485 / 4e-162 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10022480 [exp] 131 / 4e-32 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 131 / 4e-32 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10039917 [exp] 119 / 3e-28 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1) Lus10027653 [exp] 117 / 1e-27 AT3G13000 459 / 4e-156 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 115 / 8e-27 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10033328 [exp] 113 / 3e-26 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10040507 [exp] 94 / 2e-20 AT2G23700 222 / 1e-65 Protein of unknown function, DUF547 (.1) Lus10037293 [exp] 95 / 4e-20 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G157200 [exp] 310 / 5e-98 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G033100 [exp] 140 / 4e-35 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 131 / 3e-32 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.009G111100 [exp] 113 / 3e-26 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.006G216800 [exp] 112 / 7e-26 AT3G13000 437 / 1e-147 Protein of unknown function, DUF547 (.1.2) Potri.007G003900 [exp] 110 / 3e-25 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.004G150000 [exp] 105 / 1e-23 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 104 / 1e-23 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.009G009500 [exp] 81 / 7e-16 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.002G128400 [exp] 78 / 6e-15 AT5G42690 316 / 2e-102 Protein of unknown function, DUF547 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10004732 pacid=23162942 polypeptide=Lus10004732 locus=Lus10004732.g ID=Lus10004732.BGIv1.0 annot-version=v1.0 ATGGTCGACACCACTAAGAGTGAGACTGCAACCGCCGTGGAATACAACAACGACGGCAACGAAGACGAGAACATTGCAAGCCCTCGGCGGCCGGAGGCCC GGGATCATTGTAATCCACCACAAAGCCACAGGCGCTCTCGGAGAAGTCCTAAACGTAGTCGTATTGTCATATATGAACAGATGTCGACGTCGGCATCGCC GGCGTGGACGAGAAGAAGAAGTTACATGGCGAGAAGCCCTCTGCGGAATCACCACTCCGCCGTAGGCCAAAACCACGGCGTAACATCAAACCACAGAGCT TCGCTAGAGCAAGATGAAGGGCGATCGATGAGGTTGATGCTTGAACGAGCGATGGGTCGAGCTTCGAGCACTTTGTCCCCGGGCCACAGGCATTTCGCAT CTCATCAGACAAAGGAGTTGATAGCTGAGATAGAGTTACTTGAGCAAGAAGTTACCAACCGGGAGCAGCAAGTCCTGTCACTCTACAGAACCATATTTGA TGAGTGTTCTCACCTTCCTGACTCTGGAGGAAGATCAAGAGGAAGTAGTGGAGGAGGACCAACTAGCATGAACAAGAGTTGTCTCACACGGAGTTGTACA ACATCAGAAGCAAGGCCATCGTCAACAATGGCGGCACAGAAGACACTGAAGGATCATCTCCGCCGCCAATGTCCAAGCAAGCTGTCGGAGGAGATGGTGA AGTGTATGGCTGCCGTTTACTGCTGGCTCTGTAGCTCGGCCGGAGAAAACCCACTAAAGAAGGAATTAGGCAGGTCTCCTCTCTTGTCCAGGCCTTCCAC CAATGTCGTCCTGCCCCGTCGCGGCTGCGGCGGAGGAGGAGGGGAGAATCATTCAGATTACTGGTCTTGCAAATCGACGGTGGAGGTTTGTTGGATCTCC ACCGATCAGAGCCGGTATTCCTCTGCTTCCTATGCCATTGCGCACTACAGAATTCTTGTGGAACTATTGGAAGAAGTAACAGTGACACAGATGGAGACCA ATGCACAAATTGCATTCTGGATCAACGTCTACAATTCCCTTGTAATGCACGCCTACTTGGCTTATGGCATCCCGCAAAGTTCCCTGAAGAGGCTAGCGTT GTTTCACAAGGCCGCTTACAACATCGGGGGACACATTGTGAGCGCGAGCACCATCGAGCAGGTGATATTCTGCTTCCGCACCCCTCGTGTTGGCAAGGTA CATTTACTGGCTGGAGACGATTCTAACGACCACGTTGAGGAAGAAATCGAGCGAGGAAAGGCGACTCATTTCTTCCTCATTCGCCCTCCCGATCCCTCCC CATTCTCCCGCCTGCTTCACCCTCTGCACCGGAGCATTCTCCGACCCCGTGCTGAGGGTGTACAGTCCATCAAACGTCAAGGAAGAGCTCGAATCCGCGA AGAGGGAGTTCCTCCAGTCGAACGTCCTGGTGAGGACGTCCAAGAAGGTCTTCCTCCCGAAACAGCTGAGCGGTTCGCGAAGGAGGAAGGAATTACGGGC TCCGACTATCTTCTGGAGTGGGTAGCGAAGAGCGTGGACAAGAAGCTTCGGGATTCGATCGAGAAGTGCTTTGTTGAGAAGAAGAAGAAGAAGAAGGTGT CTCATGTTGTAGAGTGGTTGCCTTATAGCTCTAGGTTTAGGTATGTGTTCTCAAAGCAGTTGACTGAGAAGCCTTGGTGGGTATGA
AA sequence Show only first row Show all	>Lus10004732 pacid=23162942 polypeptide=Lus10004732 locus=Lus10004732.g ID=Lus10004732.BGIv1.0 annot-version=v1.0 MVDTTKSETATAVEYNNDGNEDENIASPRRPEARDHCNPPQSHRRSRRSPKRSRIVIYEQMSTSASPAWTRRRSYMARSPLRNHHSAVGQNHGVTSNHRA SLEQDEGRSMRLMLERAMGRASSTLSPGHRHFASHQTKELIAEIELLEQEVTNREQQVLSLYRTIFDECSHLPDSGGRSRGSSGGGPTSMNKSCLTRSCT TSEARPSSTMAAQKTLKDHLRRQCPSKLSEEMVKCMAAVYCWLCSSAGENPLKKELGRSPLLSRPSTNVVLPRRGCGGGGGENHSDYWSCKSTVEVCWIS TDQSRYSSASYAIAHYRILVELLEEVTVTQMETNAQIAFWINVYNSLVMHAYLAYGIPQSSLKRLALFHKAAYNIGGHIVSASTIEQVIFCFRTPRVGKV HLLAGDDSNDHVEEEIERGKATHFFLIRPPDPSPFSRLLHPLHRSILRPRAEGVQSIKRQGRARIREEGVPPVERPGEDVQEGLPPETAERFAKEEGITG SDYLLEWVAKSVDKKLRDSIEKCFVEKKKKKKVSHVVEWLPYSSRFRYVFSKQLTEKPWWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47380			Protein of unknown function, D...		Lus10004732 [exp]	0	1
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10028181 [exp]	3.6	0.9277
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031689 [exp]	9.5	0.9092
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10003268 [exp]	10.4	0.8909
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	11.0	0.8913
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	12.6	0.9087
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10010941 [exp]	17.6	0.8996
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	18.2	0.9036
AT5G47380			Protein of unknown function, D...		Lus10007795 [exp]	18.3	0.8105
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Lus10032007 [exp]	18.4	0.8898
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	20.1	0.8973

Compare expression of checked genes

Lus10004732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.