Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17350 309 / 3e-102 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT5G47440 286 / 4e-93 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G16670 228 / 3e-70 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G22810 127 / 2e-32 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT4G14740 119 / 4e-30 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region AT5G43870 114 / 7e-28 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) AT3G63300 94 / 6e-21 FKD1 FORKED 1 (.1.2) AT4G32785 86 / 5e-20 unknown protein AT4G32780 44 / 9e-05 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007797 [exp] 340 / 1e-115 AT4G16670 203 / 1e-62 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10009509 [exp] 119 / 5e-31 AT3G22810 180 / 2e-55 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014703 [exp] 112 / 1e-28 AT3G22810 297 / 2e-99 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10039370 [exp] 69 / 1e-12 AT4G14740 219 / 2e-69 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10006614 [exp] 69 / 3e-12 AT4G14740 504 / 5e-177 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10041187 [exp] 57 / 1e-08 AT4G14740 315 / 1e-103 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Lus10004079 [exp] 49 / 6e-06 AT3G63300 167 / 2e-47 FORKED 1 (.1.2) Lus10021903 [exp] 43 / 0.0002 AT5G43870 159 / 8e-47 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Lus10014704 [exp] 41 / 0.0007 AT3G63300 143 / 9e-41 FORKED 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077900 [exp] 324 / 3e-108 AT4G17350 356 / 4e-121 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.001G156700 [exp] 320 / 2e-106 AT4G17350 348 / 8e-118 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.002G049200 [exp] 121 / 3e-30 AT3G63300 418 / 1e-142 FORKED 1 (.1.2) Potri.018G042000 [exp] 117 / 8e-29 AT4G32785 159 / 1e-47 unknown protein Potri.010G082400 [exp] 117 / 9e-29 AT4G14740 468 / 1e-162 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region Potri.008G157000 [exp] 112 / 6e-27 AT3G22810 430 / 9e-148 Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region (.1) Potri.005G213800 [exp] 108 / 1e-25 AT3G63300 388 / 7e-131 FORKED 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05703 [flax] [poplar] Auxin_canalis Auxin canalisation CL0266 [flax] [poplar] PH PF08458 [flax] [poplar] PH_2 Plant pleckstrin homology-like region
Representative CDS sequence Show only first row Show all	>Lus10004734 pacid=23162928 polypeptide=Lus10004734 locus=Lus10004734.g ID=Lus10004734.BGIv1.0 annot-version=v1.0 ATGAGTGGTGGGTTGTATTCTGATTGGAAGAAGAACAGTTCTTTGATGGAGTACCTGGAGGAAGATGAGGATGAGGATCAGAAGCAAGGCTCTCCATTGT TGATGACAGTTGTTCAGCCACAGACGCCTAATGAGCCCATGGAGTTCCTTTCGAGATCATGGAGCCTCTCTGCTTCGGAGATCTCAAAAGCTCTTGCTCA GAAGCAGAAGCAATTCGACATCAAGCCGTGTTTTCCTCCTCCCCTCTCAGTCGTTCCAGCTGATCTAGCCAGTCTCAGTACTGTCGGTACTCCACAGCTG TCAGGTGGTGTGCAAAGCTCAACAACGCATTCCAAGAGAACAGGAACGATAGTGAAATGGTTCAGTTACCATAACAACAAGGAGACGACCAGCGGAAATA ATGTGAAGAAGAAAGACAAGGCCAGAGTTGAGAACGCTCACATACACTCCACCGTCTCGATCGCCGGCCTCGCCGCAGCATTGGCCGCCGTCGCCGCTTC TTCCGGTGGTGGAGGAAATGGAAATTCCACCGCCAAAATGAGCACGGCTCTGGCATCTGCCACGGAGCTCATGGCGTCCTATTGCGTCGAGCTAGCAGAG TCATTAGGAGCCGATCGCGACCGTGTTTCCTCCGTCGTTAAATCGGCCGTCGATATTCGGAGTCCCGGCGATCTTGTTACCCTTACTGCTGCAGCTGCCA CAGCATTGAGAGCAGAAGCGGCATTGAAATCAAGACTACCGAAGGAACCAAAGAAGAACGCAACTATTAGCCCTTGCGATCGAGCAATGTCAGATGTCGA CTCGAACTCCGACTCGATTTGCCACTTAGAACAACAACAACAACAAGGTCCAACGTGGGATGGAGAGCTTTTGCAACACACTAGAAAAGGAGCGTTGAGA TGGAAAAAAGTCTCTGTTCACATCAACAAGAAATCTCAAGTAATAATCAAGATAAAAAGCAAACACGTCGGAGGAGCATTTTCCAAGAACCAGAAAGGAA TCGTGTATGGGGTATCCGACGAGACGACGGTGTGGCCGTACAGAAAGGAGAGGGAAGAAAGCTCTGAAGAAGTCTACTTCGGAGTGAAGACTGCACAGGG GCTTCTGGAGTTCAAGTGCAAGAACAGGATCCAGAAGCAGAGATGGGTCGACGGGATTCAGAGCCTTATTATTCGAGCCAATGGCTTGCTGGAAGCAGCA AGCACCCAGAAACCAATGGAGTTTTTGAGCTTAAACAATGGAGTTTGA
AA sequence Show only first row Show all	>Lus10004734 pacid=23162928 polypeptide=Lus10004734 locus=Lus10004734.g ID=Lus10004734.BGIv1.0 annot-version=v1.0 MSGGLYSDWKKNSSLMEYLEEDEDEDQKQGSPLLMTVVQPQTPNEPMEFLSRSWSLSASEISKALAQKQKQFDIKPCFPPPLSVVPADLASLSTVGTPQL SGGVQSSTTHSKRTGTIVKWFSYHNNKETTSGNNVKKKDKARVENAHIHSTVSIAGLAAALAAVAASSGGGGNGNSTAKMSTALASATELMASYCVELAE SLGADRDRVSSVVKSAVDIRSPGDLVTLTAAAATALRAEAALKSRLPKEPKKNATISPCDRAMSDVDSNSDSICHLEQQQQQGPTWDGELLQHTRKGALR WKKVSVHINKKSQVIIKIKSKHVGGAFSKNQKGIVYGVSDETTVWPYRKEREESSEEVYFGVKTAQGLLEFKCKNRIQKQRWVDGIQSLIIRANGLLEAA STQKPMEFLSLNNGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17350			Plant protein of unknown funct...		Lus10004734 [exp]	0	1
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	4.8	0.6939
AT4G16670			Plant protein of unknown funct...		Lus10007797 [exp]	10.4	0.6772
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	24.6	0.6228
AT2G15220			Plant basic secretory protein ...		Lus10013868 [exp]	25.3	0.6067
AT5G04020			calmodulin binding (.1)		Lus10035417 [exp]	26.5	0.5764
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019835 [exp]	28.8	0.6315
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	30.2	0.6199
AT2G21990			Protein of unknown function, D...		Lus10035847 [exp]	42.8	0.6023
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10042693 [exp]	45.1	0.5629
AT1G74770			zinc ion binding (.1)		Lus10008628 [exp]	53.8	0.4823

Compare expression of checked genes

Lus10004734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.