Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 636 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 623 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 622 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 621 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 615 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 453 / 2e-153 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 289 / 3e-94 FAD-dependent oxidoreductase family protein (.1) AT3G47930 53 / 4e-07 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) AT5G06580 50 / 4e-06 FAD-linked oxidases family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002688 [exp] 663 / 0 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 655 / 0 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 595 / 0 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 542 / 0 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 494 / 6e-171 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 464 / 2e-157 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 314 / 2e-96 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10010107 [exp] 184 / 2e-54 AT2G46760 262 / 2e-84 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010106 [exp] 140 / 5e-39 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178300 [exp] 669 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 667 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 478 / 3e-163 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 54 / 3e-07 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.016G064800 [exp] 54 / 3e-07 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10004735 pacid=23162941 polypeptide=Lus10004735 locus=Lus10004735.g ID=Lus10004735.BGIv1.0 annot-version=v1.0 ATGGCTAATTACCAAGTAGTAATCCCGACGATCTTAGTAATCACACTTACCGTCTTAATCTCGTCGTCGAATTCGAGCCCGCCGGAGAATCCAATCAAAT GTACATCCCACAACACCAACTGTACGATCTCCAACTCCTACGGCAACTTCTCCGACCGCTCGATTTGTCGAACGGCCTCAGTGGTGTATCCGTCCACACA GGCCGAACTGATTGCTATCGTGGCCAACGCGACAAGATCGAGGCAGAAAATGAAAGTAACGACGCGTTACTCACACAGCATGACGAAGCTGGTCTGTCCC GATGGCGAGGACGGGCTATTAATAAGCACCAACAACCTAAACCGGATAGTGAAAATTAACAACGCTAGCAAAACAGTGACAGTCGAAAGCGGGATTCTAA CCGGGGACCTCTACGACGCACTGGCCAGGAGCGATCTGGCGTTGCCCTATACGCCCTATTTTCGAGGATTGACAATCGGGGGACTCATAAGTACTCATGC ACACGGGAGTACGTTCAAGCAGTGTGGGGGTTCGCCCAGTGATTACGTGGTGGGGTTGACGATCGTTAGCCCCGGGACGAAGGAACAAGGCTACGTTAAG GTTCGAAAGTTGCAACAAGGTGGTGTTGGTCTTGATGCTGCTAGGGTCTCCCTTGGAGTCCTTGGTGTCATCAGTGAGATTACACTAAGGGTGGAGCCTT TGTTCAAACGATCAATCTCGTTCCACATGAGAAACGATACAGATCTGGCACGCCGATCAGTTTTCTTCGGCGAAAAGCACGAGTTTGCAGACATATCGTG GTACCCTTTCCAACGCAAGGCAGTTTACCGGAATGACGATCGGGTTCCTTATTTCGTCCCTGGTGATGGTACCTACGATTTCTTGCAGATGCGGAGAACC CTCTCGTCGTCCTCAGTCGCCATCCGAGCTACAGAGGAGAAGATAGAGGCTAAGGAAGATGCTGAAACGAGGTGCGCTCTTGCAAAGGAAGTACTCCCTT TGTACTACAACTCCGCCTACGGTTTTACTAACGACGGTAAGAACTTTACGGGATATCCAATAGTCGGATACCACAACAAGCTCCAGGCAACCGGGAGCTG CTTCCTGAGCCCGGAGGACAACCTAAAGACTAGCTGTTCGTGGGACCCACGAATCGATGGTGCATTCTTCCACCAGACGACGTTTGCGATCAGCGTTCCG TTGGTCGAAGCTTTCATCGGCGAGGTCCAACGCCTCGTCGATAAGAACCCTAAGGCCGTATGCATATTGGATGAGCAGAACGGCATCCTCATTCGCTATC ACCGAGGGTCCACTGCCTACCTCGGGAAGTCTGATGATGCGATCGGGTTCGATTTCAGCTACTACAGGAGCAGGGACCCGCAGGTCCCGAGGCTGTACGA GGACGCGATGGAAGAGATCGAGCAGATGGCGTTTTTCAAGTACAATGCGACCCCTCACTGGGCCAAAAACCGGGACGTAGCGTTCGAGGGGGTCATCAAG AAGTACAGGAATGCTAAGAAGTTTCTGAAGGTGAGAGAAGAGTACGACCCGGTGGGACTGTTTTCGAGTGAGTGGACCGATTATATTCTTGGGATAAGTG ATGGGCGGCCGGCCACAAGGAGGAAGGACAAAAAGGGTTGTGCGTTGGACGGGTTGTGTATATGTCGAAACGACGAGCATTGCGCGCCCGAAAAGGGGTA TTTTTGTAGGCCGGGGAAAGTGTACAAGGATGCTAGGGTTTGTACACGAGTTCATAGCAAGGGAATGAAATAG
AA sequence Show only first row Show all	>Lus10004735 pacid=23162941 polypeptide=Lus10004735 locus=Lus10004735.g ID=Lus10004735.BGIv1.0 annot-version=v1.0 MANYQVVIPTILVITLTVLISSSNSSPPENPIKCTSHNTNCTISNSYGNFSDRSICRTASVVYPSTQAELIAIVANATRSRQKMKVTTRYSHSMTKLVCP DGEDGLLISTNNLNRIVKINNASKTVTVESGILTGDLYDALARSDLALPYTPYFRGLTIGGLISTHAHGSTFKQCGGSPSDYVVGLTIVSPGTKEQGYVK VRKLQQGGVGLDAARVSLGVLGVISEITLRVEPLFKRSISFHMRNDTDLARRSVFFGEKHEFADISWYPFQRKAVYRNDDRVPYFVPGDGTYDFLQMRRT LSSSSVAIRATEEKIEAKEDAETRCALAKEVLPLYYNSAYGFTNDGKNFTGYPIVGYHNKLQATGSCFLSPEDNLKTSCSWDPRIDGAFFHQTTFAISVP LVEAFIGEVQRLVDKNPKAVCILDEQNGILIRYHRGSTAYLGKSDDAIGFDFSYYRSRDPQVPRLYEDAMEEIEQMAFFKYNATPHWAKNRDVAFEGVIK KYRNAKKFLKVREEYDPVGLFSSEWTDYILGISDGRPATRRKDKKGCALDGLCICRNDEHCAPEKGYFCRPGKVYKDARVCTRVHSKGMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10004735 [exp]	0	1
					Lus10002099 [exp]	1.4	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	2.4	1.0000
					Lus10011594 [exp]	3.0	1.0000
AT4G17920			RING/U-box superfamily protein...		Lus10030972 [exp]	3.5	1.0000
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10031391 [exp]	3.9	1.0000
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10006735 [exp]	4.2	1.0000
AT1G52540			Protein kinase superfamily pro...		Lus10006985 [exp]	4.6	1.0000
AT5G18880			RNA-directed DNA polymerase (r...		Lus10018808 [exp]	4.9	1.0000
					Lus10037814 [exp]	5.2	1.0000
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	7.7	0.8068

Compare expression of checked genes

Lus10004735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.