Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57460 487 / 1e-168 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007798 [exp] 635 / 0 AT5G57460 890 / 0.0 unknown protein Lus10007487 [exp] 535 / 0 AT5G57460 885 / 0.0 unknown protein Lus10028963 [exp] 330 / 2e-110 AT5G57460 517 / 5e-180 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G168200 [exp] 544 / 0 AT5G57460 860 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004736 pacid=23162930 polypeptide=Lus10004736 locus=Lus10004736.g ID=Lus10004736.BGIv1.0 annot-version=v1.0 ATGTCTTGCCTTGCTCTCTCCCTCCAACCGGCGAACGGATCCGACATCCTGATCCAGACTCGCGAATGGTTTCCACCTGCCCGCGCCCTAGTCGCCACCT CCGCCTTCCGGCAGACGCGAGTGGCCTTCGCTGCAGCCAAGCACCCGGCAAAGAATCGAAACCGAGCATCCTCCTCCGATGACGACGACTATTCCCCTTC GGTATCGTCGGATTCCCTCTCCTCATTGGGAGACGACCCGCTCGCCGCCTCGAGCGGCCAGTTGATAGTCGGCGTCGAAAGCCAGTACCGCGTGGTGTAC CGCCTCGTGAACGGGATCTACGTCCTCGGGATCACGATCGCCGACCACGACAACTCCGTCAACGTCTTCGAGTGCATCCACATCGTGAACCAGGCCGTCA GCGTCATCGTCGCCGCGTGCCGAGGCGTCGACGTCACGCCGGAGAAGCTGAGCAGGAAGTACGCCGAGATCTACATGGCTCTGGACATAGTCCTCCGAGG AGTGAGCAGCATCCGTTTGGCCGCTATGCTGGCTTCAATGCACGGCGAGAGCATCGCGAAGATGGTACACTCCGTGCTCGACACGGAGAGCAAGATCCGC GGCGGAGAGACCTGGTTAGCGGTGGAAGGCCACGCGATCGAGCACGAAGGCAGCGTGGAAGCCTTTTCCAACGCCATCTTCGAGATGCCTCCAGAAACTC TTGCGGCGGGAGATGACGTGGCGGCGAGTCTCGTCGCAGCTACCGTAGGAGAACAGTTGGAGAAGAAGGAGGAGAAGGAAGAAGAGAAAGAGGAAGTTAA GGATCCTTTTGCAGCTAGTGAAGCTGTAAACAAACAAGAAGATCTAGCTGGTGAGTTCAAGAAGGATAAGAGTCAAGCTAGTGATTTGACATTGGCATTA GCAGGACTTGAAGTAACTACATTGCCGCCTGCTGAAGCTACTCAAGCTACTCATATCAATGTCGAAGGATTCGAAGGGGATTACGGTGGGATTGAGTTCA GCAACGAACAAGCTTCATTAGGAGAAACCTTTGAAGGATTCGGCGAAGCTTGGGGTGGTGGATTGGATGCTTCTGAGTTTGTTGGACCTAAGAAGGTCCC CAAGCAGCAAGGACTCGGACTTGGCGGACTCGAATTGCTTCAAACGGGTGCGGATCCTGCAGCTGCTTCCAAGGCGGCTGGCGGCGGGAGACCCTGTTAG
AA sequence Show only first row Show all	>Lus10004736 pacid=23162930 polypeptide=Lus10004736 locus=Lus10004736.g ID=Lus10004736.BGIv1.0 annot-version=v1.0 MSCLALSLQPANGSDILIQTREWFPPARALVATSAFRQTRVAFAAAKHPAKNRNRASSSDDDDYSPSVSSDSLSSLGDDPLAASSGQLIVGVESQYRVVY RLVNGIYVLGITIADHDNSVNVFECIHIVNQAVSVIVAACRGVDVTPEKLSRKYAEIYMALDIVLRGVSSIRLAAMLASMHGESIAKMVHSVLDTESKIR GGETWLAVEGHAIEHEGSVEAFSNAIFEMPPETLAAGDDVAASLVAATVGEQLEKKEEKEEEKEEVKDPFAASEAVNKQEDLAGEFKKDKSQASDLTLAL AGLEVTTLPPAEATQATHINVEGFEGDYGGIEFSNEQASLGETFEGFGEAWGGGLDASEFVGPKKVPKQQGLGLGGLELLQTGADPAAASKAAGGGRPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57460			unknown protein		Lus10004736 [exp]	0	1
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Lus10023714 [exp]	2.4	0.8926
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10037140 [exp]	3.0	0.9130
AT3G19870			unknown protein		Lus10012903 [exp]	6.3	0.8924
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	8.4	0.8817
AT1G62020			Coatomer, alpha subunit (.1)		Lus10011454 [exp]	8.9	0.8992
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10000030 [exp]	8.9	0.8508
AT4G17430			O-fucosyltransferase family pr...		Lus10004385 [exp]	9.1	0.8200
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	10.2	0.8890
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	10.7	0.8893
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	12.0	0.8877

Compare expression of checked genes

Lus10004736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.