Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57460 173 / 5e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007798 [exp] 221 / 6e-70 AT5G57460 890 / 0.0 unknown protein Lus10000167 [exp] 206 / 2e-68 AT5G57460 358 / 3e-121 unknown protein Lus10007487 [exp] 209 / 1e-65 AT5G57460 885 / 0.0 unknown protein Lus10028963 [exp] 186 / 2e-58 AT5G57460 517 / 5e-180 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G168200 [exp] 182 / 4e-55 AT5G57460 860 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004737 pacid=23162933 polypeptide=Lus10004737 locus=Lus10004737.g ID=Lus10004737.BGIv1.0 annot-version=v1.0 ATGATCCAGTACGTGTCGAATCCGGATTTGCTAGTGCCTTTAAGCAATGTGACTTTCACTTTGAAGTTGCCGGTCGATCCTACGTTGCTGAATGTTTCGC CCAAGGCAGCACTGAACAGGTCTCAGAAAGAGTTGAAATGGGTTGTACCAGAGATTCCTGTCAAAGGAGGTCCTGGGAAGTTGAGGGTAAGGATGCCTGT CGACTCCATTGAAGGAGAAGGTGAAGAAGAAGAGATAGAGGCTGTTTGTTATGTGAAATTCTCCATGGAAGGTTCTACCTCGCTATCGGAGATTTGTTTG CGGCCTGCCTCGGAGGGGGCAACCGACTTCTACGAGGTTAATCACAGGTACCAGAGTGGAGTTTATTTGTGCAATTGA
AA sequence Show only first row Show all	>Lus10004737 pacid=23162933 polypeptide=Lus10004737 locus=Lus10004737.g ID=Lus10004737.BGIv1.0 annot-version=v1.0 MIQYVSNPDLLVPLSNVTFTLKLPVDPTLLNVSPKAALNRSQKELKWVVPEIPVKGGPGKLRVRMPVDSIEGEGEEEEIEAVCYVKFSMEGSTSLSEICL RPASEGATDFYEVNHRYQSGVYLCN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57460			unknown protein		Lus10004737 [exp]	0	1
AT3G07270			GTP cyclohydrolase I (.1.2)		Lus10003152 [exp]	5.1	0.8378
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	16.4	0.8314
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025333 [exp]	19.8	0.7987
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	20.1	0.8042
AT3G16050		A37, ATPDX1.2	ARABIDOPSIS THALIANA PYRIDOXIN...		Lus10011450 [exp]	30.5	0.7951
AT5G57460			unknown protein		Lus10028963 [exp]	43.7	0.7848
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10039785 [exp]	48.0	0.7487
AT3G12650			unknown protein		Lus10037700 [exp]	49.0	0.7783
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027303 [exp]	52.1	0.7648
AT5G57460			unknown protein		Lus10007798 [exp]	58.4	0.7596

Compare expression of checked genes

Lus10004737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.