Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47420 426 / 2e-150 Tryptophan RNA-binding attenuator protein-like (.1) AT4G17420 425 / 3e-150 Tryptophan RNA-binding attenuator protein-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007800 [exp] 548 / 0 AT4G17420 445 / 9e-160 Tryptophan RNA-binding attenuator protein-like (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078900 [exp] 475 / 5e-170 AT5G47420 437 / 1e-156 Tryptophan RNA-binding attenuator protein-like (.1) Potri.001G155900 [exp] 471 / 3e-168 AT5G47420 444 / 2e-159 Tryptophan RNA-binding attenuator protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF01987 [flax] [poplar] AIM24 Mitochondrial biogenesis AIM24
Representative CDS sequence Show only first row Show all	>Lus10004739 pacid=23162959 polypeptide=Lus10004739 locus=Lus10004739.g ID=Lus10004739.BGIv1.0 annot-version=v1.0 ATGGCTGCGCCCTTCTTCTCTACTCCGTTTCAGCCTTACGTGTATCAGAGTCAACAGGCTGCTATGATACCGTTCCAAATTTTGGGCGGTGAAGCGCAGG TGGTTCAGATAATGTTGAAACCAAACGAGAAGGTTGTTGTACGACCAGGTTCAATGTGCTTCATGTCTGGCTCAGTAGAAATGGAGAACGTCTTCATTCC TGAAAATGAAGTAGGGATGTGGCACTGGCTTTTTGGCAAGACTATTACCAGTGTAGTCATTCGTAACAACGGTCCAGGCAACGGATTTGTTGGAATCGCT GCACCTTCACTTGCGAGAATTCTCCCGATCGATTTGGCTATGTTTGGTGGAGAGATTTTGTGTCAGCCAGATGCATTCCTTTGCTCCATCAACGATGTAA ATGTGAATAACGCATTCGATCCGAGGGCACGGAATATTATGGCTAGTGCAGAGGGATTCTTGAGACAAAAGCTAACCGGACAAGGGCTTGCATTCATCGT GGCTGGTGGATCTATTGTACAGAAGAAGCTGGACGTCGGAGAGGTACTAACAGTCGACGTTTCCTGTATCGCCGCCCTTAATTCCACCGTAAATGTCCAA ATCAAGTACGACGGCCCCCTGAGAAGAGCTGTCTTCGGCGGAGAAAACCTAGTAACAGCAACTCTAACCGGTCCAGGCATCGTGTTCATCCAAAGCTTGC CCTTCCAACGGTTCTCCCAGCGAATCGCAAGGGCAGTGACGTCGCCTAACATGAGGGAGAACCCGAAGTTTTTCGTCCAGATAGCACTCTTCTTCTTCCT GGCATACGTTGTTATCAATAGCCTTACACGACCGAATGATATCGCCGTACTCCCACTTGCGCGCCCGACTCAAATTGTACTGCGCTACACACCAACACAT ACCTTCCAACATCGCCAAGGCCTCGCTCTCTTTCACTACTCTTCCGCCAGCCCTCGCCGTTGTTTAAACTCACCACCTCCCCAGTCGAACTCCGATGCAT ATTCCGATACCCGGCTTCCCTTCCCGAGCAAAGGTGGCAGCGTCTACAGACATTCCACCCTTTCCCCACTCGGACGGGTACCATATGCGACACCTTCCTC GGGACGTGCTAGATGCTTGGTTTGA
AA sequence Show only first row Show all	>Lus10004739 pacid=23162959 polypeptide=Lus10004739 locus=Lus10004739.g ID=Lus10004739.BGIv1.0 annot-version=v1.0 MAAPFFSTPFQPYVYQSQQAAMIPFQILGGEAQVVQIMLKPNEKVVVRPGSMCFMSGSVEMENVFIPENEVGMWHWLFGKTITSVVIRNNGPGNGFVGIA APSLARILPIDLAMFGGEILCQPDAFLCSINDVNVNNAFDPRARNIMASAEGFLRQKLTGQGLAFIVAGGSIVQKKLDVGEVLTVDVSCIAALNSTVNVQ IKYDGPLRRAVFGGENLVTATLTGPGIVFIQSLPFQRFSQRIARAVTSPNMRENPKFFVQIALFFFLAYVVINSLTRPNDIAVLPLARPTQIVLRYTPTH TFQHRQGLALFHYSSASPRRCLNSPPPQSNSDAYSDTRLPFPSKGGSVYRHSTLSPLGRVPYATPSSGRARCLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17420			Tryptophan RNA-binding attenua...		Lus10004739 [exp]	0	1
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	10.3	0.7288
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	17.8	0.7007
AT1G04910			O-fucosyltransferase family pr...		Lus10037830 [exp]	29.3	0.6975
AT3G27970			Exonuclease family protein (.1...		Lus10008787 [exp]	49.4	0.6555
AT4G17420			Tryptophan RNA-binding attenua...		Lus10007800 [exp]	54.3	0.6340
AT4G20300			Protein of unknown function (D...		Lus10036240 [exp]	55.3	0.6474
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	56.0	0.6328
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	58.4	0.6177
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	82.2	0.6382
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10034707 [exp]	95.4	0.6130

Compare expression of checked genes

Lus10004739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.