Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47400 741 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007801 [exp] 1405 / 0 AT5G47400 827 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155800 [exp] 882 / 0 AT5G47400 777 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004740 pacid=23162936 polypeptide=Lus10004740 locus=Lus10004740.g ID=Lus10004740.BGIv1.0 annot-version=v1.0 ATGCAACCTTACTCCTACACCGTCGATTCCCTCTCCAAGTCGCAGGACATCGCCGCCGCAATCCTCGCCTCCTCAGCTCCTCCGCAGATCTCGGCCGCAT GTAGCTCCGTCGAGTCGTTCCTCCGCTCCCACACTCCCGATCAGTCCCGCCACTTCTACTCCGTCACATTCCCGACCTTAATCTGCAAGCTCTACGGATT CGACGACGCCTCCGGTGGAGGCGGCGGAGGCTGGATCGACGTAGTCCTCAGCTCGAACAACTCCGATCTCGCCTCTAGAGTTTTCGACCTCCTCTCCCCT GACGGTGTTCTGTTTCAGTCGATTTCGGCTGTTGATCGTCAGTCGCTGGTGAAGTACGTTTTCCCTGTCGAACGGTTGCCTGATTGGGCGCGGATTGTAG TCTCTAGCGATAAGGATTGTCAAGCGCTGAATATTGTTTGTCCTGTTTTCCAAGGTAAAGTGAAGGAAGGATTGAGTAAGGGAACGTCCTCTTCTTCTTC GTCTTGTTATCAGATTCAGCTGAATGTTTTCGAGTATTTTATGTATTGGTTCGCTTACTACCCGATTTGTAAGGCCAATAATGAGAATTCTGGTAGTATG ACTGTGGCCACACAGAAGAGTAAGAAGGTATCGAAGTTGGAGAACTGGACTTCTTCGATTTCCAGGATGTCACATGCTAAGCGTGGGAACGAGCAGAAGT TGGAATGCGATCTTTATGTTAGGCTTCTGTATGCTTATTTGCGTGCGTTTGTCCCTGTTCGGGACGTGGATATACACCAGCCTTATCGCAGCTCACTCTT GCATTATGCATACGGAAATGATGGAGATACGATGTTGAGGGCTGAGTTTTTCGTTGACGCGTTGGTGCATTACTGGCTTGTTGATAATGATTTTTCGCCA CTGCCTGTGAATCTTTGCAAGTCTGTTGGATTATCGTTGTCGCTTAGATCAGTGTTTGACGAGACTCCTCCGTCGTCTAGTGTGGGTGAGGTAGTTAAGT TGTTGGTTAAGTACTTGAATTGGACTGGAGGAACGGCTGAAGAAAGCATCAGACGTGTCGAAAGTCCCAATAGGGGAATGCTTTCTCCTAGTTCCTTTGA TATGAAGTCCTCTCAGGCGGTGGAGTCTTGGAATGCTTGGATTCAGAGACCGTTGTATAGGTTCATTTTGAGGACTTTTTTATTCTGTCCAATGGGGACT TCGATGAAGAATGCATCTCAGGTGTTCTCCATCTGGGTTGCTTACATTGAACCGTGGAAGATTGGAATGGATGATTTTGTGGAGCTTGATGCCATTGTTG GTGGTTCAGTCAGAAACAGTAATGGAGAAGATGTGAAAAGCAGAAATTATGATATTGCTTTGTGGGAAGGCTATGTCATGTCCAACTACCTGTACTACAG CTCATTGGTTATGCATTTTATCGGATTTGCTCACAAGTTTCTTCACACGGATGCTGAAATGATTGTCGAGATGGTCTTGAAGGTTATTACTGTGTTGACC TCAAACAAGGAGTTGTTGAATCTTATAAAGAGTGCTGATAAGCTTTTCCATGCCAAGCAATCAGGGCCTGGGAAAGCCATGCTTAATCACCTGTACAAAT ATGTTCCCCTGATCAATGAACAACTTCAGGATTGGGAGGACGGTTTGTGCGAAAGTGATGCTGATGGATCATACTTGCACGATAATTGGAACAAAGACCT AAGACTTTTTAGTGATGCTGAAGACGGTGGACAACAATTGCTTCAGTTGTTTTTATTACGAGCGGAATCCGAGTTGCAAGCCAATTCCGGTAGCAATCTT CCACAAAGCTTGGAGCTTATAGATTCACTAAAGAAGCAAGTGGGGTGCCTCTATGGTGCCTACCCTGTAAGATCTCTCTCCTTCACATCAGAAAAGAAGC AGCAGCAGTGTGAGCAGATCCGAGACGAGATATTCACACCTCGAAAATTAGGCAACAAGACCTTCTCCGACGCCACCAAGTACAAAGGCGACTCGATGAA GCGTCCCATCTCCGCTGACGAGGTTGCATGGCTAGCAAAATGGCTCGTGTTCTTGTCTTGTTGGCTGAACGAGACCCTGGGGCTGAATCGATCAGAAAAC AACAATGCCATTGCCAACCCTAAATGGTCGTACCTTGAGGTTTCCAGCAATGAAGCGAACGTCGATGGACCTGCCGAAACCTTGAATACTGTTTCGCATG CCATCTACTCGTGGCTCCTGTTTTTCGGAGCTTTTGTTGTCGGGTGGATGAGAAAGCATGACTTGCGGGTGAATCTCAGGCTTTTGGCTTCAAAGAAGGT CATTACTGTCTTGCTCTTGTCAGCTCTTTTCAGTATGTTGAAGAAAGCTGCTAGAATGTTTCTGTGA
AA sequence Show only first row Show all	>Lus10004740 pacid=23162936 polypeptide=Lus10004740 locus=Lus10004740.g ID=Lus10004740.BGIv1.0 annot-version=v1.0 MQPYSYTVDSLSKSQDIAAAILASSAPPQISAACSSVESFLRSHTPDQSRHFYSVTFPTLICKLYGFDDASGGGGGGWIDVVLSSNNSDLASRVFDLLSP DGVLFQSISAVDRQSLVKYVFPVERLPDWARIVVSSDKDCQALNIVCPVFQGKVKEGLSKGTSSSSSSCYQIQLNVFEYFMYWFAYYPICKANNENSGSM TVATQKSKKVSKLENWTSSISRMSHAKRGNEQKLECDLYVRLLYAYLRAFVPVRDVDIHQPYRSSLLHYAYGNDGDTMLRAEFFVDALVHYWLVDNDFSP LPVNLCKSVGLSLSLRSVFDETPPSSSVGEVVKLLVKYLNWTGGTAEESIRRVESPNRGMLSPSSFDMKSSQAVESWNAWIQRPLYRFILRTFLFCPMGT SMKNASQVFSIWVAYIEPWKIGMDDFVELDAIVGGSVRNSNGEDVKSRNYDIALWEGYVMSNYLYYSSLVMHFIGFAHKFLHTDAEMIVEMVLKVITVLT SNKELLNLIKSADKLFHAKQSGPGKAMLNHLYKYVPLINEQLQDWEDGLCESDADGSYLHDNWNKDLRLFSDAEDGGQQLLQLFLLRAESELQANSGSNL PQSLELIDSLKKQVGCLYGAYPVRSLSFTSEKKQQQCEQIRDEIFTPRKLGNKTFSDATKYKGDSMKRPISADEVAWLAKWLVFLSCWLNETLGLNRSEN NNAIANPKWSYLEVSSNEANVDGPAETLNTVSHAIYSWLLFFGAFVVGWMRKHDLRVNLRLLASKKVITVLLLSALFSMLKKAARMFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47400			unknown protein		Lus10004740 [exp]	0	1
AT5G47400			unknown protein		Lus10007801 [exp]	2.2	0.8784
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Lus10018580 [exp]	2.8	0.8738
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10011461 [exp]	3.2	0.8288
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	6.9	0.8720
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	7.2	0.8573
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	9.5	0.8531
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	9.6	0.7819
AT1G75990			PAM domain (PCI/PINT associate...		Lus10025072 [exp]	11.4	0.8209
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	13.7	0.8441
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	14.7	0.8567

Compare expression of checked genes

Lus10004740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.