Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47430 462 / 1e-148 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT4G17410 451 / 4e-145 DWNN domain, a CCHC-type zinc finger (.1.2.3) AT2G32950 51 / 3e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007803 [exp] 720 / 0 AT5G47430 517 / 2e-175 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10034393 [exp] 140 / 6e-36 AT5G47430 186 / 4e-52 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10029205 [exp] 134 / 7e-34 AT5G47430 175 / 2e-48 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10021702 [exp] 115 / 2e-27 AT4G17410 140 / 1e-36 DWNN domain, a CCHC-type zinc finger (.1.2.3) Lus10029990 [exp] 54 / 5e-07 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10007802 [exp] 52 / 6e-07 ND / Lus10035332 [exp] 52 / 1e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G078800 [exp] 621 / 0 AT5G47430 635 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.001G156000 [exp] 588 / 0 AT5G47430 620 / 0.0 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.013G112200 [exp] 246 / 1e-72 AT5G47430 260 / 1e-78 DWNN domain, a CCHC-type zinc finger (.1.2.3) Potri.004G002700 [exp] 50 / 5e-06 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G159300 [exp] 50 / 1e-05 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF08783 [flax] [poplar] DWNN DWNN domain
Representative CDS sequence Show only first row Show all	>Lus10004741 pacid=23162947 polypeptide=Lus10004741 locus=Lus10004741.g ID=Lus10004741.BGIv1.0 annot-version=v1.0 ATGGCAGTGCATTACAAGTTTAAGAGTGCTAAAGATTATGATTCAATATCAATGGACGGGCCCTTTATATCGGTTGGTACTTTGAAAGAAAAAATCTTTG AATCAAAGCACCTGGGCAGGGGTACAGACTTCGATCTGGTGGTGACTAATGCCCAAACTAATGAAGCCATGCTTAGTTATTGGCCGGAGCTCGCAAGAGC TTGGCAGCCAAAGGTGGAATATATGGTGGACAATGCCCCTCAAGAGCAAAGTGGCTTTGCAGGTGCTGATTCATCTGTTTCAAAATACAATGAAGAGACC GAGTGGGATGAGTTTGGTACCGACTTATATGCCATTCCTGAAGTTGCGCCTGTAATATCAAGCAATCCGCCTCCTGAGGCTCCCCCTGCCAGCAAAGCTG ACGAGGACAGCAAAATTAAAGCTTTGATTGATACTCCGGCTTTGGATTGGCAGCGTCAAGGTGCCGATGGCTTTGGCATGGGTAGAGGTTTTGGCAGGGG AATGAGTGGTAGAATGGGTGGACGTGGCTTTGGTGGGATGGGTATGGAGAGGAAAAATCCTCCACAGGGTTATGTCTGCCACAGGTGTAAGGTACCAGGA CATTATATTCAGCACTGCCCTACCAATGGTGATCCAAATTACGATATCAAGAGAGTGAAACCTCCTACTGGGATCCCGAAGTCGATGTTAATGCAAACAC CAGATGGTTCATATGCATTGCCTAGCGGCGCAGTCGCTGTTTTAAGGCCAAATGAGGCTGCTTTTGAGAAAGAAATTGAAGGGTTGCCTACGTCAACGTC GAGACCTGTTGGTGATCTTCCGCCAGAACTGCATTGTCCTTTGTGCAAAGAAGTTATGAAAGATGCTTCACTCACAAGCAAGTGCTGTTTCAATAGCTTT TGTGACAAATGTATTAGGGAGTACATTATCTCGAAATCTCGGTGTGTATGTGGTGCGACAAGTGTCCTTGCCGATGACCTCCTTCCAAACAAGACGCTTA GGGATACCATCAATCGTATCTTAGAGTCTGGCAACAGTAGTGCAGATAATGCTGGCAGCACCTTCCAAGTTCAAGATATGGAGTCTGCACGTTATCCGCA ACAACCCAAGTTTCCTTCTCCCACGCAGTCGGCTGCATCAAAAGAGGAGCCTAGATTACCTCCCACTGTTGAAGAATCTTCTAAGCCGAAGGTCAACCCT CCCACCGTTGAGGAAAAACATGTTCCGATCCAACAACCGGCTGTTGAGAAGCCAATTACTTCTAAAGTGCCTGACGTCTCGGAAGCTACTCATGAGTCGA TGAGTATGAAGGAGCCGGCATCACAAGGCAGCGCTCCGCTCATGGATGAAGAAGTGCAGCAGAAGCTTGCTCAGGCTGATGCAGCAAAGAAGAAGAAAAA GAAGAAAGTCCGCGTGCCTCCGAATGGTAGATTCCTTTTCGATGATAGTAGTAACCACTTCAAACAATGCTGTATAGCAGATATGTGGAAAGGCCCTCAA GATCTTGCGGCTGAGAATTTCATGATGCCTATTGGTATGCCCCCTGCTCCTTACAACCCTTACATGATGCCCGGGATGCAATCCGGGATGGACCCATTTA TGGGTGGTCCGTTCGGCGGTCCAATGCCACCTTTTATGGGTTACGGTATGGGGCCACTGGACATGCCACCTTTCGGAGGTATGATGCCACCAGATCCTTT TGGTGGGCAAGGGTTTATGATGCCGCCGATGATGCCACCCCAAAGGGATCTAGCGGAATTGGGAATGGGCATGAACGGTTGCCCTCCAGCAATGAGCAGG GACCAGTTTGAGGCGTGGAAGGCTGAGATGAGGAGGCGGCGCGAAAATGGTAGACGAGCTGAAAGCCATAGGGAGTTTACGAGGGAGCGTGAGTTCGGAA GAGAGGTCAGCAGCAGCGGAACTAACGGAGGTGGTCCACCGATGAAATCTCTGAAATCTGATCGGCTATCGTACCGATTCGGAAATTTAAAATCGGTTCG AAGAATTTCCCGCTACAGTCAGGTGGAGATCCTCACCACTACCGTCAACGACCAGAGAGACCCTCCCCCGATCGCTCCGGCACGTGTTTGCACCCGCCGC TGCGCCCCTCCTCGGCCGCCTTCCCTCCCTCCGTCACGCCCTTCTTCGAAAAGAAAGTCGGATCACCACGACCACGAGGCACGTGACCATAAGGAACAGG ACTACGACCACCACGACCACCATCACGAGCATCGTGAGCGCGACCGGGAGCATCATCGCGAACGAAGCAAGGATCGGGATCGAGACAACGATCGCCCCGA TCGCGAGCGTAGCGGCGAGAACGATCGTCGCCACCACCGCAAGCGTTCGGAGTCTTCGAGTAAATCAACCACCGCTGACGCGGCTGCCGTTGCTGCGGAA GCCGCGGAAGCTGCGGAAAGAAAGAGGAAGTCGAGCGTCTTCTCGCGGATCAGCTTCCCGGAAGGGGAGGCAGCCGCAGCTAGCAAAAAGAGGAAGCCAC CGTCTTCTTCCTCCACTGCCGAGAAGCCATCTTCATCAGCCAACGGCCACTACGAGAGGAAACTGGCAGCTGCAGGGAGAAAGAGCAGCGGCATTGCTGC TGCAGCTGACAACGAATCGAGCGACGAGGACAGGCATTTCAAGAGGAAGCCCTCGAGGTACGAGCCTTCGCCTCCACCAGCAGGGGAATGGGAAGAGGAT ACGAAGCATTCTTCCAGGAGCTCAAGGGACAGGAAGCATAGATGA
AA sequence Show only first row Show all	>Lus10004741 pacid=23162947 polypeptide=Lus10004741 locus=Lus10004741.g ID=Lus10004741.BGIv1.0 annot-version=v1.0 MAVHYKFKSAKDYDSISMDGPFISVGTLKEKIFESKHLGRGTDFDLVVTNAQTNEAMLSYWPELARAWQPKVEYMVDNAPQEQSGFAGADSSVSKYNEET EWDEFGTDLYAIPEVAPVISSNPPPEAPPASKADEDSKIKALIDTPALDWQRQGADGFGMGRGFGRGMSGRMGGRGFGGMGMERKNPPQGYVCHRCKVPG HYIQHCPTNGDPNYDIKRVKPPTGIPKSMLMQTPDGSYALPSGAVAVLRPNEAAFEKEIEGLPTSTSRPVGDLPPELHCPLCKEVMKDASLTSKCCFNSF CDKCIREYIISKSRCVCGATSVLADDLLPNKTLRDTINRILESGNSSADNAGSTFQVQDMESARYPQQPKFPSPTQSAASKEEPRLPPTVEESSKPKVNP PTVEEKHVPIQQPAVEKPITSKVPDVSEATHESMSMKEPASQGSAPLMDEEVQQKLAQADAAKKKKKKKVRVPPNGRFLFDDSSNHFKQCCIADMWKGPQ DLAAENFMMPIGMPPAPYNPYMMPGMQSGMDPFMGGPFGGPMPPFMGYGMGPLDMPPFGGMMPPDPFGGQGFMMPPMMPPQRDLAELGMGMNGCPPAMSR DQFEAWKAEMRRRRENGRRAESHREFTREREFGREVSSSGTNGGGPPMKSLKSDRLSYRFGNLKSVRRISRYSQVEILTTTVNDQRDPPPIAPARVCTRR CAPPRPPSLPPSRPSSKRKSDHHDHEARDHKEQDYDHHDHHHEHRERDREHHRERSKDRDRDNDRPDRERSGENDRRHHRKRSESSSKSTTADAAAVAAE AAEAAERKRKSSVFSRISFPEGEAAAASKKRKPPSSSSTAEKPSSSANGHYERKLAAAGRKSSGIAAAADNESSDEDRHFKRKPSRYEPSPPPAGEWEED TKHSSRSSRDRKHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10004741 [exp]	0	1
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	2.0	0.8870
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	3.2	0.8771
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10025416 [exp]	4.6	0.8513
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	13.7	0.8054
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	15.1	0.8021
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10020230 [exp]	16.0	0.8272
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	21.5	0.7722
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	22.6	0.7766
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	22.8	0.7807
AT1G04300			TRAF-like superfamily protein ...		Lus10021216 [exp]	24.3	0.8191

Compare expression of checked genes

Lus10004741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.