Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43090 148 / 7e-44 Aconitase/3-isopropylmalate dehydratase protein (.1.2) AT2G43100 135 / 1e-38 ATLEUD1, IPMI2 isopropylmalate isomerase 2 (.1) AT3G58990 133 / 9e-38 IPMI1 isopropylmalate isomerase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007804 [exp] 123 / 4e-35 AT2G43090 205 / 6e-68 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10028964 [exp] 0 / 1 AT2G43090 309 / 1e-106 Aconitase/3-isopropylmalate dehydratase protein (.1.2) Lus10007488 [exp] 0 / 1 AT2G43090 312 / 5e-108 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107800 [exp] 157 / 5e-47 AT2G43090 291 / 1e-99 Aconitase/3-isopropylmalate dehydratase protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004742 pacid=23162962 polypeptide=Lus10004742 locus=Lus10004742.g ID=Lus10004742.BGIv1.0 annot-version=v1.0 ATGCCGCTGCTATGCTCCTTTCGCACCAAAAATGGCGACGATATCTTACTCCTCTTCACCAACAACCTTCGCAGCCGCCGCCGCCTCCTCCTCCTCGGCA GCCAAAACTGCTGCTTTCTCCTTCCTTCCCGCCTCTCCAACTTCCCTCCGATTTCCCTCCATTTCTTCAACCAATCACCCACGAGCATCCTTCACGTCTC AACGCGCCGCCGCAGCCACACCATCACCAACCACCGCCACCTCACCAACATCCTTCCACGGCCTGTGCTATGTTGTGGGCGACAACATCGACACCGACCA GATCATACCGGCGGAGTACCTAACCTTAGTCCCATCCAACCCGGACGAGTACGAGAAGCTGGGGTCCTACGCCCTAATCGGCCTTCCAGCGTCGTACGAA ACTCGATTCGTCGATCCAGAACAGACGAAGACGAAATACTCGATTTTGATCGCGGGACAGGCCCGCGAGCTTGGCGCGAGCACGCGCGGGTGGCGCTGGG AGCTGCGGGAGTGGCGGCGGTGGTGGCGCAGTCGTACGCGAGGATCTTCTTCAGGAACTCCGTAGCGACTGGGGAAGTGTATCCGCTTGATACTGAAATT AGGGTCTGTGAGGAGTGTAGTACTGGTGATGTGTTGACGATTGAGCTTGCTGAGAGTAAGTTGATCAATCATACTACTGGGAAGGAGTACGTGTTGCAGC CGATTGGTGATGCTGGGCCGGTGATTGAGGCCGGCGGGATTTTTTCCTACGCTAGGAAGACTGGGATGATTCCTTCGAGATCTGGTTAG
AA sequence Show only first row Show all	>Lus10004742 pacid=23162962 polypeptide=Lus10004742 locus=Lus10004742.g ID=Lus10004742.BGIv1.0 annot-version=v1.0 MPLLCSFRTKNGDDILLLFTNNLRSRRRLLLLGSQNCCFLLPSRLSNFPPISLHFFNQSPTSILHVSTRRRSHTITNHRHLTNILPRPVLCCGRQHRHRP DHTGGVPNLSPIQPGRVREAGVLRPNRPSSVVRNSIRRSRTDEDEILDFDRGTGPRAWREHARVALGAAGVAAVVAQSYARIFFRNSVATGEVYPLDTEI RVCEECSTGDVLTIELAESKLINHTTGKEYVLQPIGDAGPVIEAGGIFSYARKTGMIPSRSG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43100		ATLEUD1, IPMI2	isopropylmalate isomerase 2 (....		Lus10004742 [exp]	0	1
AT5G65250			unknown protein		Lus10000635 [exp]	1.0	0.8732
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	3.5	0.8574
AT1G01840			unknown protein		Lus10041376 [exp]	4.2	0.8508
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10036801 [exp]	4.5	0.8000
AT3G55780			Glycosyl hydrolase superfamily...		Lus10028258 [exp]	13.4	0.8066
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	15.6	0.8230
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	15.9	0.8499
AT1G11360			Adenine nucleotide alpha hydro...		Lus10038561 [exp]	16.4	0.8435
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007804 [exp]	20.8	0.8371
AT3G57120			Protein kinase superfamily pro...		Lus10021451 [exp]	23.0	0.8075

Compare expression of checked genes

Lus10004742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.