Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 329 / 3e-116 Ribosomal protein L23/L15e family protein (.1) AT4G17390 328 / 7e-116 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007805 [exp] 367 / 2e-131 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10000165 [exp] 366 / 3e-130 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10028965 [exp] 366 / 4e-130 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1) Lus10009653 [exp] 359 / 3e-128 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10009017 [exp] 352 / 4e-125 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106800 [exp] 348 / 6e-124 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 348 / 6e-124 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 347 / 2e-123 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1) Potri.002G141500 [exp] 343 / 4e-122 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.014G057300 [exp] 343 / 4e-122 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF00827 [flax] [poplar] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Lus10004743 pacid=23162932 polypeptide=Lus10004743 locus=Lus10004743.g ID=Lus10004743.BGIv1.0 annot-version=v1.0 ATGGGTGCCTACAAGTATGTTTCCGAGTTATGGAGGAAGAAGCAGTCCGATGTCATGCGGTTCATCCAGAGGGTGAGGTGCTGGGAGTACCGCCAGCACC CGTCGATCGTTCGGGTTACTCATCCTACCCGCCCCGACAAGGCTAGGCGTTTGGGGTATAAGGCCAAGCAGGGATACGTGGTCTACCGTGTCCGTGTCAG GCGTGGTGGAAGGAAGAGGCCAGTACCCAAGGGTATCGTCTACGGTAAACCCACCAACCAGGGAGTTACTCAGCTGAAGTTCCAGAGGAGCAAGAGGTCT GTTGCTGAAGAGCGTGCTGGAAGGAAGCTCGCCGGTCTCCGAGTCCTCAATTCGTACTGGGTCAATGAGGACTCGACCTACAAGTACTTTGAGGTGATCC TGGTCGACGTGGCGCACAATGCCATCCGCAATGACCCGAGGATCAACTGGCTCTGCAACCCGGTCCACAAGCACAGAGAGCTGCGCGGTCTCACCTCTGC CGGAAAGAAGTACAGAGGACTTCGCGGAAAGGGTTCCAGGTACCACAAGAACAAGCCCTCCCGCCGTGGAACATGGAAGAGGAACAACACCCTCTCCCTC CGCAGATACCGTTAG
AA sequence Show only first row Show all	>Lus10004743 pacid=23162932 polypeptide=Lus10004743 locus=Lus10004743.g ID=Lus10004743.BGIv1.0 annot-version=v1.0 MGAYKYVSELWRKKQSDVMRFIQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLAGLRVLNSYWVNEDSTYKYFEVILVDVAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGSRYHKNKPSRRGTWKRNNTLSL RRYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	1.0	0.9778
AT2G40290			Eukaryotic translation initiat...		Lus10017435 [exp]	2.8	0.9714
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	3.7	0.9776
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	4.2	0.9725
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	4.6	0.9740
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10015588 [exp]	4.9	0.9730
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005441 [exp]	5.5	0.9681
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10013183 [exp]	5.9	0.9728
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10034685 [exp]	6.5	0.9636
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	6.5	0.9722

Compare expression of checked genes

Lus10004743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.