Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03580 340 / 3e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 211 / 6e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 207 / 1e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16610 196 / 1e-56 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G09040 189 / 5e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G15510 187 / 2e-52 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 185 / 3e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 183 / 4e-51 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G04370 182 / 4e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 182 / 6e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007806 [exp] 645 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 203 / 3e-58 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 192 / 5e-54 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 191 / 5e-54 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 192 / 1e-53 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026460 [exp] 189 / 5e-53 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 188 / 7e-53 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035619 [exp] 188 / 7e-53 AT4G35130 794 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 186 / 3e-52 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G466066 [exp] 225 / 2e-66 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 206 / 2e-59 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G178200 [exp] 204 / 8e-59 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G058700 [exp] 200 / 6e-57 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 196 / 7e-56 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G170300 [exp] 192 / 2e-55 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G085800 [exp] 190 / 4e-54 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G052200 [exp] 191 / 1e-53 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 191 / 1e-53 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 189 / 4e-53 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004744 pacid=23162964 polypeptide=Lus10004744 locus=Lus10004744.g ID=Lus10004744.BGIv1.0 annot-version=v1.0 ATGCAGGAGGTTAACGTCCGGCCTGATAATTATACTTTCCCGTCGGTTATCAATGCTTGTGCAGCGTTAATGGATTTGGAAATGGGAAAGGCTGTTCATG ATAGAGTTAAGGAAAGGGGGTTTGGGAAGGATTTGTATATAGGGAATGCGTTGGTTGATATGTATCCGAGGTTTGGTGATCTGGTGAATGCACGGGAGGT GTTTGATAAAATGCCTCAGAGAGATCTTGTCTCGTGGAATAGTTTGATTTCGGGGTATAGCGCGAACGTGCATTGGGAGGAGTCGTTGGGGGGTTATACG GAGTTTAGAATGGCAGGGTTGAAGCCGGATTGTTTTACTGTTTCGGGTGTTTTGCCTGCGTGTGGTGGGTTGGTTGACGTTGAGGGGGAGGAGATCCATG GATTGGTTGAGAAGATGGGGATGAAGGGCGATGTAATGGTGAACCATGGATTGCTTTCTATGTACTTTAAGTTTGACAAATTGATCGATGCTCGAAGGGT CTTTGATGAGATGGTGATAAGGGATACCGTTAGTTGGAACATCTTGATTTGTGGATATTTTGAGCTGAGGTTTGAAGAGTCGATTGATCTTTTTGTGCAT ATGGTTCGTGTGTTTAGGCCTGATTTGTTGACAATCACAATCGTTCTCCGTGCTTGTGGGTACCTGGAGGACTTGGAGTTCACAACATCGAGGGATGTGT TTGACGCAATGGGATACAAGGATCCCGTCTCATGGAACTCCTTGATAAGTGCTTACATCCAGAATGGCAGTTACGATGAAGGATTGAAAGTGTTTAAGAC GATGGTGAAGGAATTGATGCCTGATTCTGTCGCCTATGTTATGATCTTGTCCATCTCGGCTAAATCAGTAGACTTGGACTTGGGGAAGCATACCCACTGT GCTATTGTTAAATCAGGATTTGTGTCGGATCTGGTTGTTCAGAATGCATTACTTGATCTCTATGCGAAATGCTGGAGAATGGTTGATTCACTCGTGGCTT TCACATCGATGACAGTTCGTAATGTTATATCGTGGAATACTCGTGGCTTTCAGGTGCGAGACGCTTCATGTTGTGCTACTTTACCAAAACTACCATTCTA TCTTCAGCCACCATTGATCAAGACAGAGCGAACCCCTGTTGTTACGCGCTCTACATCGGCACGTAACAGTAATAGAAAACGCTAG
AA sequence Show only first row Show all	>Lus10004744 pacid=23162964 polypeptide=Lus10004744 locus=Lus10004744.g ID=Lus10004744.BGIv1.0 annot-version=v1.0 MQEVNVRPDNYTFPSVINACAALMDLEMGKAVHDRVKERGFGKDLYIGNALVDMYPRFGDLVNAREVFDKMPQRDLVSWNSLISGYSANVHWEESLGGYT EFRMAGLKPDCFTVSGVLPACGGLVDVEGEEIHGLVEKMGMKGDVMVNHGLLSMYFKFDKLIDARRVFDEMVIRDTVSWNILICGYFELRFEESIDLFVH MVRVFRPDLLTITIVLRACGYLEDLEFTTSRDVFDAMGYKDPVSWNSLISAYIQNGSYDEGLKVFKTMVKELMPDSVAYVMILSISAKSVDLDLGKHTHC AIVKSGFVSDLVVQNALLDLYAKCWRMVDSLVAFTSMTVRNVISWNTRGFQVRDASCCATLPKLPFYLQPPLIKTERTPVVTRSTSARNSNRKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10004744 [exp]	0	1
AT3G52280		GTE6	general transcription factor g...		Lus10008393 [exp]	2.0	0.7593
					Lus10030382 [exp]	4.9	0.7533
AT2G39170			unknown protein		Lus10040608 [exp]	6.2	0.7602
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10026218 [exp]	13.4	0.6948
AT3G15395			unknown protein		Lus10039067 [exp]	14.0	0.7136
AT4G15720			Tetratricopeptide repeat (TPR)...		Lus10006517 [exp]	15.2	0.7183
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	15.8	0.7184
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	16.7	0.7304
AT1G27060			Regulator of chromosome conden...		Lus10036707 [exp]	19.8	0.6818
AT5G02710			unknown protein		Lus10015040 [exp]	22.6	0.7225

Compare expression of checked genes

Lus10004744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.