Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16760 1087 / 0 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 1048 / 0 ACX5 acyl-CoA oxidase 5 (.1) AT5G65110 279 / 3e-84 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 230 / 3e-66 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 215 / 9e-61 ACX6 acyl-CoA oxidase 6 (.1) AT3G51840 63 / 3e-10 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1) AT3G45300 44 / 0.0003 IVDH, ATIVD, IVD isovaleryl-CoA-dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004386 [exp] 1229 / 0 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 1216 / 0 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10040183 [exp] 1144 / 0 AT4G16760 1051 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10041711 [exp] 269 / 2e-80 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 225 / 2e-64 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10039894 [exp] 223 / 1e-63 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10024038 [exp] 204 / 7e-57 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10002177 [exp] 186 / 2e-51 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10027811 [exp] 67 / 2e-11 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155500 [exp] 1174 / 0 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.003G079200 [exp] 1171 / 0 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.007G090400 [exp] 277 / 2e-83 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 270 / 6e-81 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.013G123500 [exp] 226 / 1e-64 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.019G092600 [exp] 221 / 6e-63 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.016G118000 [exp] 69 / 3e-12 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 66 / 5e-11 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain CL0087 [flax] [poplar] Acyl-CoA_dh PF00441 [flax] [poplar] Acyl-CoA_dh_1 Acyl-CoA dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004745 pacid=23162946 polypeptide=Lus10004745 locus=Lus10004745.g ID=Lus10004745.BGIv1.0 annot-version=v1.0 ATGGATAGCGTAAGCGGCGTGGATCACCTGGCCGACGAGCGGAGCAAGGCTCAGTTCGACGTCGAGGAGATGAAGGTCGTATGGGCCGGCTCCCGTCACG ACTTCGAGCTCTCCGACCGCATCGCCCGCCTCGTCGCTAGCGATCCGGCTTTTAGGAAGGATAACAGGGTGACGATGGGAAGGAAGGAGCTGTTCAAGAA CACGCTGAGGAAGACTGCGTATGCTTGGAAGAGGATAATTGAGCTCCGTCTGACTGAGGAAGAAGCGACGAAGTTGAGGTTCTATGTCGATGAACCTGCT TTCACTGATCTTCACTGGGGAATGTTTATACCAGCAATTAAAGGGCAAGGAACAGATGAGCAGCAGCAGAAATGGCTGCCTTTGGCGCATAAGATGCAGA TAATCGGATGTTACGCACAGACTGAACTTGGTCATGGTTCTAATGTTCAAGGTCTTGAGACCACTGCTACATTTGATCCCCAGACTGATGAATTTGTCAT CCATAGTCCCACCCTGACTGCTAGCAAATGGTGGCCTGGTGGATTGGGTAAAGTGTCTACTCATGCTGTGGTTTATGCACGTTTGATTACCAATGGGCAA GAAAATGGAGTCCATGGTTTTATCGTCCAGCTCCGTAGCTTAGATGATCACCTGCCTCTCCCGGGCATAACAGTTGGTGATATTGGTATGAAATTTGGGA ATGGTGCGTATAACACCATGGACAATGGTGTTTTACGTTTTGAACATGTGCGCATTCCAAGGGATCAAATGCTTCAGAGGGTGCTACAAGTTACAAGGGA AGGGAAATGTGTCGAGTCAAATGTCCCTCGACAGCTGATTTATGGGACTATGGTTTATGTGCGTCAAACAATTGTGGCTGATGCTTCTCGTGCTTTATCA CGGGCAGTTTGTATTGCAACTAGATATAGTGCTGTTCGCAGGCAATTCGGTTCTCAAAATGGCCTTGAGACACAGGTTATTGATTACAAGACTCAACAGA GTAGACTGTTCCCTTTGCTGGCTTCTGCATATGCATACAGATTTGTGGGCGAATGGTTAGAATGGCTGTACAAGGATGTCACACAAAGACTTTCTGCAAA GGACTTCTCTACTTTGCCTGAGGCTCATGCTTGTACTGCTGGTTTGAAGTCCTTGACTACTTCTTTCACTGCTGACTCCATTGAAGAGTGTAGGAAATTG TGTGGTGGCCATGGTTACCTTTGCAGTAGTGGCCTCCCTGAGTTATTTGCGGTTTACGTTCCTGCCTGTACATATGAAGGAGACAACGTTGTCTTGCTCT TGCAGGTGGCAAGATTTCTGATGAAGACTGTAGCTCAGCTGCCTTCTGGAAAGAAGCCTCTTGGAACCACATCTTACCTAGGACGTGCAGAACATCTTTT ACAGTATCGTTGTAACGTTCAGAAGGCTGAGGACTGGCAAAACCCTGCTGTGATACTTGAGGTCTTCGAAGCCAGGGCCGCCAGGATGTGCGTTAACCGT GCTCAAAAGCTTGCCGGTTTCTCTTCCCCTGAAGAGGGTTTCGCAGAACTTTCAGCTTTTCTGGCCGAGGCTGCTGTCGCTCATTGCCAACTGATCGTTG TCTCCAAGTTCATCGAGAAGCTGCAGCAAGAAATACCAGGAAAAGGTGTGAAACAGCAGCTGCAGAACCTCTGCAACATTTACGCGTTGAACCTGGTCAA CAGACACCTAGGAGATTTCCTCTCCACCGGGGCCATTTCCGCCAAGCAAGCTTCCTTAGCAGATGATCAGCTTAGATCATTATTCTCTCAGGTTCGTCCC AACGCGATTGCACTGGTGGACGCGTTCAACTACACCGACCACTACCTCGGGTCGATTTTGGGTCGATACGATGGAGACGTCTACCCGAAGCTCTACGAAG AAGCGTGGAAGGATCCATTGAACGATTCGGTGGTGCCCGATGGCTACCATGAGTATGTCCGTCCGATGCTGAAACAGCAGCTTCGTAATGCCAGACTCTG A
AA sequence Show only first row Show all	>Lus10004745 pacid=23162946 polypeptide=Lus10004745 locus=Lus10004745.g ID=Lus10004745.BGIv1.0 annot-version=v1.0 MDSVSGVDHLADERSKAQFDVEEMKVVWAGSRHDFELSDRIARLVASDPAFRKDNRVTMGRKELFKNTLRKTAYAWKRIIELRLTEEEATKLRFYVDEPA FTDLHWGMFIPAIKGQGTDEQQQKWLPLAHKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTASKWWPGGLGKVSTHAVVYARLITNGQ ENGVHGFIVQLRSLDDHLPLPGITVGDIGMKFGNGAYNTMDNGVLRFEHVRIPRDQMLQRVLQVTREGKCVESNVPRQLIYGTMVYVRQTIVADASRALS RAVCIATRYSAVRRQFGSQNGLETQVIDYKTQQSRLFPLLASAYAYRFVGEWLEWLYKDVTQRLSAKDFSTLPEAHACTAGLKSLTTSFTADSIEECRKL CGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVAQLPSGKKPLGTTSYLGRAEHLLQYRCNVQKAEDWQNPAVILEVFEARAARMCVNR AQKLAGFSSPEEGFAELSAFLAEAAVAHCQLIVVSKFIEKLQQEIPGKGVKQQLQNLCNIYALNLVNRHLGDFLSTGAISAKQASLADDQLRSLFSQVRP NAIALVDAFNYTDHYLGSILGRYDGDVYPKLYEEAWKDPLNDSVVPDGYHEYVRPMLKQQLRNARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004745 [exp]	0	1
AT5G66450			Phosphatidic acid phosphatase ...		Lus10041774 [exp]	3.5	0.8617
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	4.0	0.8595
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	4.9	0.8383
AT4G35360			Uncharacterised conserved prot...		Lus10013846 [exp]	5.7	0.8085
AT4G26850		VTC2	mannose-1-phosphate guanylyltr...		Lus10009725 [exp]	5.9	0.8389
AT5G65500			U-box domain-containing protei...		Lus10035947 [exp]	6.5	0.8574
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	6.9	0.8310
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	8.9	0.8551
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	11.0	0.8227
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10037370 [exp]	12.5	0.8201

Compare expression of checked genes

Lus10004745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.