Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16770 336 / 2e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16765 301 / 9e-103 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G46490 237 / 2e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G35190 235 / 1e-75 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G46480 184 / 2e-56 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G46500 176 / 1e-53 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 122 / 6e-32 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 121 / 2e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G24530 120 / 2e-31 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G13610 117 / 3e-30 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007820 [exp] 488 / 2e-175 AT4G16770 291 / 4e-98 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034964 [exp] 271 / 1e-89 AT1G35190 493 / 9e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10012963 [exp] 269 / 9e-89 AT1G35190 498 / 7e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011126 [exp] 214 / 2e-67 AT1G35190 415 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10043026 [exp] 214 / 9e-67 AT1G35190 408 / 8e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005037 [exp] 120 / 5e-31 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10032930 [exp] 118 / 1e-30 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 114 / 3e-29 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 114 / 6e-29 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079600 [exp] 449 / 2e-160 AT4G16770 359 / 1e-124 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.018G086800 [exp] 288 / 2e-96 AT1G35190 451 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.018G086900 [exp] 268 / 1e-88 AT1G35190 478 / 6e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G047100 [exp] 127 / 6e-34 AT3G50210 503 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.006G101100 [exp] 117 / 3e-30 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 115 / 3e-29 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 114 / 3e-29 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 114 / 5e-29 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 112 / 2e-28 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G069300 [exp] 112 / 3e-28 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004746 pacid=23162938 polypeptide=Lus10004746 locus=Lus10004746.g ID=Lus10004746.BGIv1.0 annot-version=v1.0 ATGGCAGCATCCGTCGCGAAACTCCCAGTCATAAACCTCTCCTCTCCCGATAAAGTATCCACCGCCGAGTCGATTCGTAAGGCGTGCATCGACTACGGCT TCTTCTACCTCGCGAATCACGGAGTGGAAGAAGAACTGATCCGGAGAGTGTTCGAAGAGAGCCGCAAGTTCTTCTCACTCCCGGTGGATGAGAAATCGAA GCTGCCTAGCAAAAATCAGAGAGGATACACTGCTTTGTATGCCGAGAATCTCGATCCTGATTCCAGCTCCAGAGGCGATTCGAAGGAGAGCTTCTACGTT GGTCCAATAGACGGAAATAAAGCTGAGCTGAACCAGTGGCCTTCTGCAGAAGTTCTTCCTTCATGGAGGTTGACGCTCGAGTCTTACTACCGAAAGGTCA CGTCAGCTGGAACAAGATTGATCTCCTTAATTGCTCTGGCTTTGAATTTGGACGAAAATCACTTTCAGAAGATTGGTGCCTTGGATGAGCCAGAAGCATT CCTTCGACTCATATATTATCCAGGTGAACTGGGCTGTTCGAATGAAGAGCTGTATGGTGCTTCTGCCCATTCAGACTATGGAATGATCGCATTACTGATA GATGATGGGGTACCAGGACTCCAGGCATGTGTTGATAAATTCTTCAAGGTTTGTAGGGAGAAGTCGAGACAGCCTAGGGTATGGGAAGACGTGCCACACT TAGACGGGTGCTTCATCGTTAACATTGGAGACATGATGGAGAGGTGGACAAATTGCTTGTTCCGGTCCACTTTGCATCGAGTAATGCCAACTGGACAAGA ACGTTATTCCATGGCATGCTTCTTCAGTCCTAACCCGGATTGCATCATCGAGTGCTTGGAGAGTTGCTGCAGCGAGTCTTCTCCCCCAAGGTTTCCTGCC ATACGTAGTATGGATTACTTGCAGGAGCGGTTTAGGCGTACGTATGGCTCATAG
AA sequence Show only first row Show all	>Lus10004746 pacid=23162938 polypeptide=Lus10004746 locus=Lus10004746.g ID=Lus10004746.BGIv1.0 annot-version=v1.0 MAASVAKLPVINLSSPDKVSTAESIRKACIDYGFFYLANHGVEEELIRRVFEESRKFFSLPVDEKSKLPSKNQRGYTALYAENLDPDSSSRGDSKESFYV GPIDGNKAELNQWPSAEVLPSWRLTLESYYRKVTSAGTRLISLIALALNLDENHFQKIGALDEPEAFLRLIYYPGELGCSNEELYGASAHSDYGMIALLI DDGVPGLQACVDKFFKVCREKSRQPRVWEDVPHLDGCFIVNIGDMMERWTNCLFRSTLHRVMPTGQERYSMACFFSPNPDCIIECLESCCSESSPPRFPA IRSMDYLQERFRRTYGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16770			2-oxoglutarate (2OG) and Fe(II...		Lus10004746 [exp]	0	1
AT5G10620			methyltransferases (.1)		Lus10026980 [exp]	1.7	0.9015
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039428 [exp]	2.0	0.9137
AT1G33970			P-loop containing nucleoside t...		Lus10005300 [exp]	3.7	0.8908
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	3.9	0.8961
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10033021 [exp]	4.0	0.8974
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10005091 [exp]	5.8	0.9022
AT2G23940			Protein of unknown function (D...		Lus10028450 [exp]	7.5	0.8906
					Lus10042562 [exp]	8.9	0.8885
AT5G27830			unknown protein		Lus10020660 [exp]	11.0	0.8830
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	12.0	0.8673

Compare expression of checked genes

Lus10004746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.