Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22980 1334 / 0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G56070 449 / 8e-144 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 433 / 9e-138 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 364 / 3e-110 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 357 / 9e-108 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT5G39900 102 / 3e-22 Small GTP-binding protein (.1) AT5G08650 100 / 1e-21 Small GTP-binding protein (.1) AT5G13650 100 / 2e-21 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 99 / 6e-21 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G62750 92 / 6e-19 ATSCO1, ATSCO1/CPEF-G SNOWY COTYLEDON 1, Translation elongation factor EFG/EF2 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031201 [exp] 375 / 6e-116 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031763 [exp] 365 / 1e-112 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031129 [exp] 365 / 1e-110 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 364 / 4e-110 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031186 [exp] 226 / 1e-64 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031779 [exp] 228 / 6e-63 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031185 [exp] 191 / 2e-54 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10007838 [exp] 173 / 6e-50 AT3G22980 111 / 4e-29 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10043478 [exp] 171 / 2e-46 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G152500 [exp] 1400 / 0 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 438 / 2e-139 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 437 / 3e-139 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.005G098100 [exp] 433 / 1e-137 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.006G190600 [exp] 372 / 2e-113 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.018G114900 [exp] 372 / 5e-113 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.001G305300 [exp] 108 / 7e-24 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.017G079800 [exp] 99 / 6e-21 AT5G39900 999 / 0.0 Small GTP-binding protein (.1) Potri.013G123700 [exp] 97 / 2e-20 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.006G053000 [exp] 97 / 2e-20 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0437 [flax] [poplar] EF-G_C PF00679 [flax] [poplar] EFG_C Elongation factor G C-terminus CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10004749 pacid=23162939 polypeptide=Lus10004749 locus=Lus10004749.g ID=Lus10004749.BGIv1.0 annot-version=v1.0 ATGGCGGATTCCAATATCCACAACGTGAGGAACATATGCATCCTAGCACACGTCGACCACGGCAAAACGACGCTGGCCGACCACCTAATCGCGGGCACGA GAGGCGGCCACGTCCACCCGAAACTCGCCGGTAAGCTCCGCTTTATGGATTACCTAGACGAGGAGCAGCGGCGAGCCATAACGATGAAGAGCTCTTCAAT CTCGCTCAATTTTAGAGACTCTTACTCGATTAACCTTATTGATTCTCCGGGGCACATGGACTTCTGCAGCGAGGTCTCCACCGCCGCTAGGTTAAGCGAC GGCGCGCTGGTTCTGGTAGACGCCGTGGAAGGAGTCCACATCCAGACGCACGCTGTTCTACGGCAGGCGTGGATCGAGAAGCTGACTCCTTGCTTGGTTC TTAACAAGATTGATAGGTTGATTACCGAATTGAAGTTCACTCCTATGGAGGCGTACACTAGGCTGTTGAGGATAGTTCATGAGGTTAACGAGATCATCAG TGGGTACAAATCCGAGAAGTACTTGTCAGATGTCGATTCAATCCTCGCTAGTCAGTCTGGCGAGTTGGGAGGAGATGAAGGGATTGAGTTTCTTGAAGAG GATGATGAAGAGGATACTTTCCAGCCTCAGAAGGGGAATGTAGCGTTTGTTTGTGCATTGGATGGATGGGGGTTTACTACTAAGGAATTCTCCGTGTTCT ACGCTGAGAAATTTGGTATAAGTTCTCCTGAGAAGTTGCAGACGGCTCTATGGGGAGCTAAGTACTTCATCCCCAAGACGAAGATGATAGTAGGGAAGAA AGGATTAGAAGGAGGTGGTAGTAGTAGTAGTAATGACAAAGTGCGTCCAATGTTTGTGCAATTTGTTCTTGAACCATTGTGGCAGGTTTATAAGTCTGCA TCAGAACCCGATTGCGTTAAGATGCTTGAAAAGGTTATTAAGTCGTTCAAGCTCAATATCCCTCAACGTGAGCTGCAAAACAAAGATCCGAAGCTCGTTC TTCAATCCGTCATGAGCAGGTGGCTTCCATTGTCCGATTCAGTCCTGTCAATGGTTGTCAGGTGTATGCCTGATCCCATTGCGGCTCAATCGTTCAGGAT TTCACGGTTGCTTCCCAAGAGAGATGCTGATTCGGATGTGGAAGAGGCTGAAGTTGTGAGGAAATGTGTTGAGGTATGTGATTCCACACCTGAAGCGCCT TGTGTTGCTTTCGTTTCTAAAATGTTTGCTGTGCCGTCAAAAATGCTGCCTAGAAAGGGTCCTGATGGTGAGAATGTGGATTATTTCGTCGATGAAGAGG GGGATTCAGATGAGTGCTTCCTTGCATTTGCTAGAATCTTTAGTGGGGTTATGTATGCAGGGCAGAAAATCTATGTTCTTTCAGCTTTATACGACCCGTC AAAGCCGGATTCGATCCACAAGCATTTACAGGAGGCTGAGTTGCAGTCCTTGTATCTAATGATGGGTCAGGGTTTGGAACCGGTGAGTTCCGTAAAGGCA GGGAATCTCGTCGCCATTCGTGGCCTTGGCCAGCACATACTGAAGAGTGCTACTCTATCATCCACCAGAAACTGCTGGCCTTTTTCCAACATGGCATTCC AAGTCTCCCCAACTCTTCGGGTTGCAATCGAGCCGACCGATCCAGCAGACATTAATGCATTAATGAAAGGGCTAAAGCTTCTGAACCGAGCCGATCCATT CGTAGGGGTGACAGTTTCATCCAGAGGGGAGCATGTCCTTGCTGCTGCAGGAGAGGTTCATCTGGAGAGGTGCATCAAGGACTTGAAAGAACGGTTTGCC AAAGTTAACCTCGAGGTATCTCCGCCTCTCGTGTCGTATCGAGAGTCGATCGAGGGCGATACATCCAACAGTTCTGATTACTTTGAGAAGGTGACTCCGA ACGGGCGGTGTGTAGTCCGCGTTCAAGTCATGAAGCTTCCAACTGCGATCACGAACCTACTCGACGAAAGCTCCGAGACTCTCGCTGATGTTGTGAGCGG TAAGCTTGACAAGAATGCAGTCGAGGAGTTCCGTAAGAGGTTGATCGATGCTGTGGATAGCGATGTCAAGTGGCGGAAGCTGCTGAAAAGGATATGGGCA TTCGGTCCGGGGCAGGTCGGCCCTAACATCCTCTTCACTCCGGATCCCGAAACCACGAGGAACGACGATTTGTCGCTCCTCGTGGTTGGTTCTCCACACG TTTCGGATCGGTTAGGGTTGCTGGACGATTCGGGCGACGAATCCACCTCGATAAGCGAGCATCCACTTCAGAACAGTGTAGTGTCCGGATTCCAGCTGGC GACATCAGCCGGCCCTCTGTGCGACGAACCGATGTGGGGGCTCGCGTTCATCGTCGAGACACGTGTATCTCCGCTGGCGGAACAGCCTGACGAATCGGAA TCCAATCAGCACGGGATATTCCAGGGGCAAGTAATGGCGACGGTGAAAGACGCGTGCAGATCCGCGATACTCCAGAAGAAGCCGCGGATTGTTGAAGCGA TGTACTTATGCGAGCTCAACACTAGGACCGATCAATTGGGGTCGACGTACGTGGTTCTGAACCGGAGAAGAGCTAGAGTAGTGAAGGATGTGATGAATGA AGGGTCTGGGGTGTTCACGGTACATGCTTACGTACCGGTCTCTGAGAGCTTTGGGTTTGCGGATGAGCTGAGGAGAGAGACGTCCGGCGGGGCGAGTGCG CTTCTGGTGCTTAGCCATTGGGAGGCGTTGGCAGAGGATCCTTTTTTTGTGCCGACGACGGAGGAGGAGAAAGAGGAGTTTGGAAACGGGTCGAGCGTGT TGCGTAATACTGCGAGGAAGCTTATCGATTCGGTTCGGAGAAGGAAGGGGCTCCCCGTGGAGGAGAAGGTGGTTCAGTATGGTACTAAGCAGAGGACTCG GGCCAGGAAAGTGTAG
AA sequence Show only first row Show all	>Lus10004749 pacid=23162939 polypeptide=Lus10004749 locus=Lus10004749.g ID=Lus10004749.BGIv1.0 annot-version=v1.0 MADSNIHNVRNICILAHVDHGKTTLADHLIAGTRGGHVHPKLAGKLRFMDYLDEEQRRAITMKSSSISLNFRDSYSINLIDSPGHMDFCSEVSTAARLSD GALVLVDAVEGVHIQTHAVLRQAWIEKLTPCLVLNKIDRLITELKFTPMEAYTRLLRIVHEVNEIISGYKSEKYLSDVDSILASQSGELGGDEGIEFLEE DDEEDTFQPQKGNVAFVCALDGWGFTTKEFSVFYAEKFGISSPEKLQTALWGAKYFIPKTKMIVGKKGLEGGGSSSSNDKVRPMFVQFVLEPLWQVYKSA SEPDCVKMLEKVIKSFKLNIPQRELQNKDPKLVLQSVMSRWLPLSDSVLSMVVRCMPDPIAAQSFRISRLLPKRDADSDVEEAEVVRKCVEVCDSTPEAP CVAFVSKMFAVPSKMLPRKGPDGENVDYFVDEEGDSDECFLAFARIFSGVMYAGQKIYVLSALYDPSKPDSIHKHLQEAELQSLYLMMGQGLEPVSSVKA GNLVAIRGLGQHILKSATLSSTRNCWPFSNMAFQVSPTLRVAIEPTDPADINALMKGLKLLNRADPFVGVTVSSRGEHVLAAAGEVHLERCIKDLKERFA KVNLEVSPPLVSYRESIEGDTSNSSDYFEKVTPNGRCVVRVQVMKLPTAITNLLDESSETLADVVSGKLDKNAVEEFRKRLIDAVDSDVKWRKLLKRIWA FGPGQVGPNILFTPDPETTRNDDLSLLVVGSPHVSDRLGLLDDSGDESTSISEHPLQNSVVSGFQLATSAGPLCDEPMWGLAFIVETRVSPLAEQPDESE SNQHGIFQGQVMATVKDACRSAILQKKPRIVEAMYLCELNTRTDQLGSTYVVLNRRRARVVKDVMNEGSGVFTVHAYVPVSESFGFADELRRETSGGASA LLVLSHWEALAEDPFFVPTTEEEKEEFGNGSSVLRNTARKLIDSVRRRKGLPVEEKVVQYGTKQRTRARKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10004749 [exp]	0	1
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10025418 [exp]	2.8	0.8740
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	3.7	0.8384
AT5G16420			Pentatricopeptide repeat (PPR-...		Lus10030222 [exp]	4.9	0.8689
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10038816 [exp]	4.9	0.8685
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	7.5	0.8736
AT2G33730			P-loop containing nucleoside t...		Lus10031509 [exp]	9.9	0.8499
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	11.6	0.8676
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018486 [exp]	12.0	0.8346
AT3G18310			unknown protein		Lus10025089 [exp]	12.6	0.8071
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Lus10014912 [exp]	13.6	0.8301

Compare expression of checked genes

Lus10004749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.