Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45290 1035 / 0 Transketolase (.1) AT3G60750 1027 / 0 Transketolase (.1.2) AT4G15560 44 / 0.0005 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000789 [exp] 1099 / 0 AT2G45290 1106 / 0.0 Transketolase (.1) Lus10030283 [exp] 1052 / 0 AT2G45290 1121 / 0.0 Transketolase (.1) Lus10031708 [exp] 1043 / 0 AT3G60750 1255 / 0.0 Transketolase (.1.2) Lus10031128 [exp] 936 / 0 AT2G45290 1130 / 0.0 Transketolase (.1) Lus10007839 [exp] 92 / 2e-21 AT3G60750 84 / 1e-19 Transketolase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068200 [exp] 1080 / 0 AT2G45290 1174 / 0.0 Transketolase (.1) Potri.002G146300 [exp] 1074 / 0 AT2G45290 1180 / 0.0 Transketolase (.1) Potri.010G224600 [exp] 659 / 0 AT3G60750 764 / 0.0 Transketolase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain CL0254 [flax] [poplar] THDP-binding PF00456 [flax] [poplar] Transketolase_N Transketolase, thiamine diphosphate binding domain
Representative CDS sequence Show only first row Show all	>Lus10004750 pacid=23162952 polypeptide=Lus10004750 locus=Lus10004750.g ID=Lus10004750.BGIv1.0 annot-version=v1.0 ATGGGGTGTGCACCGATGGGTCATGTACTGTACGACGAGTTCATGAGGTTTAACCCGAAGAATCCAAACTGGTTCAACCGTGACAGGTTTGTTTTGTCGG CTGGCCATGGCTGCTTGCTGCAGTATGCTCTGCTCCATCTCGCTTGCTACGACAGCTGCAAGATGGAGGATTTGAAGAGGTTTCGTCAATGGGGAAGCTC AACTCCTGGTCATCCGGAGAACTTTGAGACTCCTGGTGTTGAAGTCACTACTGGTCCACTTGGTCAGGGAATTGCAAATGCAGTAGGAATGGCTCTTGCA GAGAAGCATTTGGCAGCTCGATTCAACAAGCCAGATTCTGAAATCGTTGACCATTACACATACTGCATTTTAGGAGATGGATGCCAAATGGAGGGAGTGG CACAGGAAGCATGTTCGCTGGCAGGCCACTGGGGCCTCGGAAAGCTCATCGCCTTGTACGACGACAACCACATCTCGATTGACGGAGACACTGAGATCGC CTTCACCGAGGACGTGGCCATGCGCTTCGAGGCACTCGGATGGCACGTCCTCTCGGTGAAGGATGGCAACAATGGTTACGACGAGATTCGCGCTGCTATT CGGGAGGCCAAGGCTGTCACTGACAAGCCCTCTATGATCAAGATTACAACAACGATTGGCTATGGATCTCCGAACAAATCGAACTCGTATTCAGTCCATG GGAGTGCATTGGGTGCTAAGGAAGTTGATGCCACTCGGAAGAACCTTGGGTGGCCTCATGAGCCTTTCCATGTACCTGAAGATGTTAAGGAGCATTGGAG CCGCCATGTTCGAGCTGGTGCTTCCCTCGAAGCCGAATGGAACGCCAAATTCGTGGAGTATGAGCACAAGTACGGGGAAGAAGCCGCAGTGCTCAAGTCT ATCATCACTGGTGAACTGCCCACTGGTTGGGAGAAAGCACTTCCTACGTACACTCCAGATAGCCCAGCTGACGCCATAAGAGCTCTGTCACAGCGCACCT TAAACTCCCTCGCCGACGTCCTCCCAGCATTCGTCGGAGGCAGCGCCGACCTCGCCTCATCGAACTTAAGCGTGATGAAAAAATTCGGAAACTTCCAGAA ACACACGCCGGAGGAACGCAACATACGGTGGGGAGTCCGAGAACACGGCATGGGAGCCATCTGCAACGGCATTGCACTCCACTGCCCCGGGATGGTCCCG TACTGCGCGACTTTCTTCGTCTTCACCGACTACCTCAGGGCGTCGATACGGCTTTCTGCCCTGAGCGGGTCGCGGGTTATCTACGTGATGACCCACGACT CGATCGGCGTGGGCGAGGACGGCCCCACCCACCAGCCAATCGAGCACCTGGCCAGCTTCCGGGCCATGCCGAACGTCCTCGTGCTCCGGCCTGCCGACGG GAACGAGACGTCTGGCGCGTACCGGGTCGCGGTACTCAACATGAAGAGGCCGTCTGTGCTCGTAATAGCGAAACAGGCGGCCCCTCAGCTCTCCGGAACC TCGATCGAGGGCGTGGAGAAGGGAGGATACGTTGTTTCAGACAATTCAGGTGGCGAACCGGATGTGATTCTGATCGGGACGGGTACCGAGCTGGCGCTGG CTGTCCAGGCGGCAGAGGTGTTAAGGAAGGAAGACAGGAAGGGAGTGAGGGTCGTTTCGTTGGTGTCATGGGAGCTTTTCGAAGAGCAATCGGAGGAGTA TAAGGAGAGCGTGCTGCCTGTTGGTGTCACGGCTAGGGTGAGCGTTGAAGCTGGCTCGACATTCGGGTGGGAGAGGATGGTTGGGAGCAAAGGGAAGTCG ATCGGAATCGATCGGTTCGGTGCGAGTGCCCCGCTACCTGTGGTGTATGAGCAGCTTGGCATCACAGCTGACGCTGTGATCACTGCTGCTAGAGAAGTTT GCTCATAA
AA sequence Show only first row Show all	>Lus10004750 pacid=23162952 polypeptide=Lus10004750 locus=Lus10004750.g ID=Lus10004750.BGIv1.0 annot-version=v1.0 MGCAPMGHVLYDEFMRFNPKNPNWFNRDRFVLSAGHGCLLQYALLHLACYDSCKMEDLKRFRQWGSSTPGHPENFETPGVEVTTGPLGQGIANAVGMALA EKHLAARFNKPDSEIVDHYTYCILGDGCQMEGVAQEACSLAGHWGLGKLIALYDDNHISIDGDTEIAFTEDVAMRFEALGWHVLSVKDGNNGYDEIRAAI REAKAVTDKPSMIKITTTIGYGSPNKSNSYSVHGSALGAKEVDATRKNLGWPHEPFHVPEDVKEHWSRHVRAGASLEAEWNAKFVEYEHKYGEEAAVLKS IITGELPTGWEKALPTYTPDSPADAIRALSQRTLNSLADVLPAFVGGSADLASSNLSVMKKFGNFQKHTPEERNIRWGVREHGMGAICNGIALHCPGMVP YCATFFVFTDYLRASIRLSALSGSRVIYVMTHDSIGVGEDGPTHQPIEHLASFRAMPNVLVLRPADGNETSGAYRVAVLNMKRPSVLVIAKQAAPQLSGT SIEGVEKGGYVVSDNSGGEPDVILIGTGTELALAVQAAEVLRKEDRKGVRVVSLVSWELFEEQSEEYKESVLPVGVTARVSVEAGSTFGWERMVGSKGKS IGIDRFGASAPLPVVYEQLGITADAVITAAREVCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45290			Transketolase (.1)		Lus10004750 [exp]	0	1
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	1.7	0.9724
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Lus10021754 [exp]	2.2	0.9617
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	2.4	0.9669
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	2.4	0.9664
					Lus10042887 [exp]	8.0	0.9523
AT5G54970			unknown protein		Lus10032643 [exp]	8.1	0.9487
AT1G06930			unknown protein		Lus10009929 [exp]	10.2	0.9657
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	12.2	0.9470
AT2G35350		PLL1	poltergeist like 1 (.1)		Lus10004554 [exp]	13.0	0.9359
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	14.1	0.9393

Compare expression of checked genes

Lus10004750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.