Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55740 563 / 0 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19720 248 / 4e-72 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G18520 219 / 4e-63 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 219 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G34400 215 / 7e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G25270 205 / 8e-59 OTP70 organelle transcript processing 70, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 205 / 1e-57 MEF22 mitochondrial editing factor 22 (.1) AT2G33680 204 / 4e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26540 203 / 9e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 202 / 1e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007840 [exp] 1105 / 0 AT5G55740 579 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 224 / 4e-65 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039703 [exp] 223 / 1e-64 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039594 [exp] 218 / 1e-62 AT4G18520 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018492 [exp] 214 / 2e-61 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029482 [exp] 213 / 5e-61 AT4G18520 624 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001230 [exp] 216 / 1e-60 AT1G19720 890 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033713 [exp] 210 / 8e-60 AT1G03540 726 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017446 [exp] 212 / 3e-59 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155400 [exp] 582 / 0 AT5G55740 706 / 0.0 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G018800 [exp] 237 / 3e-68 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 218 / 9e-63 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G215500 [exp] 221 / 3e-62 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G035100 [exp] 215 / 1e-61 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G030200 [exp] 219 / 2e-61 AT1G19720 985 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G187800 [exp] 217 / 1e-60 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G170300 [exp] 212 / 1e-60 AT4G18520 717 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 214 / 4e-60 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068900 [exp] 208 / 2e-59 AT3G20730 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004751 pacid=23162950 polypeptide=Lus10004751 locus=Lus10004751.g ID=Lus10004751.BGIv1.0 annot-version=v1.0 ATGGCGTCTCTGCCACTCACCACCACATCCCCCGCGTCAAACACCGTCGACACCACTCAATTCAATTCCACCAACAATATCCGACGAACTCTCCTCATCA AACCCCCCACCGGAACCCGCCGCGATGGTTACAGATCTTACTTTCACAGCATTTCCTTCCTCTCCAGACAGGGCCGAGTCCGAGAAGCCCTCGGATTACT CAACGACATGGAGCTGAAGTCCTACCTACCAGGCCAGGAAATCTACAGCGAGCTTCTCCAAGGATGCGTCACCAACAAGGACGTCTCCACCGGCCAGCAA CTCCACGCCAGGATCGTCAAGAACGGCGACCTGTACTCCGCCAACGAGTACATCGAGACGAAACTTGTCATCTTCTACGCCAAATGCGACTTGTCTGAAG CTGCGGATACGCTTTTCCATAGGTTGCAGTCCGAGACTCCGTTCTCATGGGCTGCGATCATCGGTTTACGGAGTAGGATGGGCGATAACGTCGGAGCTGT AACTTGTCTCAGTAAGATGGTTGAGAACGGTCTCTCGATTGATAATTTCGTCGCTCCGAATGTTCTGAAAGCATGCGGCGGATTACAGTGGATTGAATGT GGGAGAGCGGTGCATGGATTGTCAATCAAGATAGGTCTTGATGCTTGCGTGTATGTTTCCAGCAGTCTCGTTGATATGTACTCGAAATGTGGTGTTGTGG AAGACGCACGGAAGGTGTTCGACGGAATGCCTGAAAGAAACACAGTCACTTGGAACTCGATGATCTCCGGATACGCACAGAATGGATTGAACGAGGAAGC TATCGACATGTTTCTAGAGATGAGGTTGGATGATTTCGAGCCTACTGTCGTCACTCTCTTGAGTTTGCTTTCCGCTTCTGCGAATCTCTGTGCTGTTGAA GAAGGTAAGCAAGGGCATTCTCTTGCTGTAAGATTCGGGTTTGCGCTGGATAAGATCATGGGGAGTTCGATCTTGAACTTCTATTCGAAACTCGGTCTGA TCGAAGACGTGGAGTTGATTTTTGATAGCATGCTCGACCAAGACGAGGTGACTTGGAATCTGTTGATCTCGTCTTACGTGCGGGTTTTCGAATCCGATAA TGCGCTCGGTACGTGTCGTTCGATGAGATTAGCTAATCTGCGATTTGACGCGGTAACTCTCGCGTCCGTACTATCTGTTTGTTCTCATACTAAGAATCTT ACGCTCGGGAAAGAAGCACATTGTTTTTGTTTGAGGAACAGACTCTGTTCCGACATGGTCGTGGCAAGCGGGATTGTGGATATGTATGCGAAATCTAAAC GAATTGGCGACGCGGTTAGAGTTTTCGAGTTTACAATGAATGGGGAAACGAACATCGTGTTGTGGAACGCGATGTTGACTGCTTATGTGGATAGCGGGCA TATCGGGCAGGCGTTGAAGTTGTTCTATAGGATGGAGCTGGACAGCGTGCCGCAAGATGTCACGTCGTGGAATGCGGTGGTTATGGGGTTTTTGAAGAAC GGAGAGGTGGATGAAGCGAAGTATATGTTTTCGAAAATGCAGTCTGCTGGTATCGTTCCGAATTCGACTACGTTGATGACTCTCATATCCGGTCTCGTTC GGAACTGTTGTGGAGGCGAATACAGTGACATTGGTTATCTGGTGCGAAAAGTCGAAGAATCGGGGGTAAGATCTAACGTTCTGAACGTCATTACCACATA CTCCGGTGATTCGACATTGTTCCGGGATCTGAAAGCTATATATGGCTTTGTCTTGAGGCATTACCTGTAG
AA sequence Show only first row Show all	>Lus10004751 pacid=23162950 polypeptide=Lus10004751 locus=Lus10004751.g ID=Lus10004751.BGIv1.0 annot-version=v1.0 MASLPLTTTSPASNTVDTTQFNSTNNIRRTLLIKPPTGTRRDGYRSYFHSISFLSRQGRVREALGLLNDMELKSYLPGQEIYSELLQGCVTNKDVSTGQQ LHARIVKNGDLYSANEYIETKLVIFYAKCDLSEAADTLFHRLQSETPFSWAAIIGLRSRMGDNVGAVTCLSKMVENGLSIDNFVAPNVLKACGGLQWIEC GRAVHGLSIKIGLDACVYVSSSLVDMYSKCGVVEDARKVFDGMPERNTVTWNSMISGYAQNGLNEEAIDMFLEMRLDDFEPTVVTLLSLLSASANLCAVE EGKQGHSLAVRFGFALDKIMGSSILNFYSKLGLIEDVELIFDSMLDQDEVTWNLLISSYVRVFESDNALGTCRSMRLANLRFDAVTLASVLSVCSHTKNL TLGKEAHCFCLRNRLCSDMVVASGIVDMYAKSKRIGDAVRVFEFTMNGETNIVLWNAMLTAYVDSGHIGQALKLFYRMELDSVPQDVTSWNAVVMGFLKN GEVDEAKYMFSKMQSAGIVPNSTTLMTLISGLVRNCCGGEYSDIGYLVRKVEESGVRSNVLNVITTYSGDSTLFRDLKAIYGFVLRHYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10004751 [exp]	0	1
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	1.0	0.9634
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10041946 [exp]	2.8	0.9274
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10011941 [exp]	5.1	0.8785
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10016971 [exp]	5.2	0.9169
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10042081 [exp]	5.7	0.8924
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	6.0	0.9119
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	6.0	0.8984
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10010473 [exp]	8.5	0.8985
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	8.8	0.9038
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10024925 [exp]	9.3	0.8733

Compare expression of checked genes

Lus10004751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.