Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08960 1411 / 0 ARM repeat superfamily protein (.1) AT1G26170 77 / 7e-14 ARM repeat superfamily protein (.1) AT3G59020 60 / 8e-09 ARM repeat superfamily protein (.1.2) AT2G46520 50 / 7e-06 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT2G31660 46 / 0.0002 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT4G27640 45 / 0.0003 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007842 [exp] 1850 / 0 AT3G08960 1493 / 0.0 ARM repeat superfamily protein (.1) Lus10008367 [exp] 122 / 9e-33 AT3G08960 93 / 2e-23 ARM repeat superfamily protein (.1) Lus10026726 [exp] 60 / 7e-09 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10025509 [exp] 60 / 9e-09 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10035079 [exp] 50 / 1e-05 AT1G26170 1225 / 0.0 ARM repeat superfamily protein (.1) Lus10030241 [exp] 49 / 2e-05 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G119900 [exp] 1461 / 0 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 67 / 6e-11 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.T108626 [exp] 66 / 1e-10 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.014G149600 [exp] 62 / 2e-09 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 57 / 1e-07 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.014G100000 [exp] 54 / 6e-07 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.002G172700 [exp] 52 / 2e-06 AT2G46520 1421 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF03810 [flax] [poplar] IBN_N Importin-beta N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004753 pacid=23162929 polypeptide=Lus10004753 locus=Lus10004753.g ID=Lus10004753.BGIv1.0 annot-version=v1.0 ATGGCGCTATCGACTTCCGATTTGCCAGCGATATACTCGCTGCTGACGAATTCCATGAGCGGCGACGTGAGCGTGCGGAGGCCAGCTGAGGCCGCGCTGT TGCAGTCCGAGAGGAGGCCTGGTTACTGCTCATGCTTGATGGAAGTGATAATCGCGAAGGATTTAGCAGCGCAGGTTGGCGTTAGGTTGATGGCTACCGT TAATTTCAAAAACTGCATCAACCGGCACTGGAGAAGCAGGCGCGATTCAACGGGGATGAGTATTGAAGAGAAGAGTCACTTGCGGCAGAAACTCCTGTCG CACTTGAGAGAAGAGGACTATAAGATAGCTTTGTTGTTGGCTGTGGTCATTTCGAAGATTGCTCGCATTGATTATCCTAAGGATTGGCCGGAGCTCTTTA CAATTTTGGCGCAACAGCTTCAATCAGCTGATGTTCTCACTTCCCACCGGATTTTTATGATTCTCTTCCGAACTTTGAAGGAGTTATCAACCAAACGCCT CCCCGCTGATCAAAAGAACTATGCTCAGATATCTGCCCAACTCTTTGACTATTGCTGGCACCTTTGGCAAAGTGATATGAGAACGATACTGCATAGTTTC TCAACACTTGCTCAGAATTGTGATCCAAATGCTGAGCAGCAGCAAGATGAACTTTATCTGATCAGTGAGAGATGGCTGTTGTGTTTGAAGATTATACGAC AGTTGATATTATCTGGTTTTCCAAGCGATGCAAAGGCTGTACAGGAGGTCAGGCCTGTTAAGGAGGTCTCGCCTATGATCTTGAATGCGATTCAGTCATT GCTTCCATATTATTCATCTTTCAAGAAGGGAAATAGAAACATGTGGGATTTTTTGAAGAAGGCAACTACCAAAATGATGAAGGTCTTAGTCGCTATTCAA AACAAGCATCCTTATTCTTTCAGCGATAAGTCTGTCCTGCCACCGGTTTTGGATTTTTGTTTAAACAAGATAACTGCGCCTGATGAGGAGCTGTTTTCGT TTGAGCAATTTCTGATTCAATGTATGGTAATGGCTAATGCTGTCGGTGGTGTTCTCACCTCACTGCTTCCGAGTGAACGCATAATACTCTTGTGCAATGT GTTGATAAGAAGGTATTTTGTTCTAACGGCTGCTGACTTGGAAGAATGGTCCAGAAGTCCAGAATCTTTTCATCATAAGCAGGACATGGTGCAGTGGACA GAGAAACTAAGGCCTTGTGCTGAAGCTTTGTACATTGTTCTATTTGAAAACCATAGCCAGCTTTTGGGTCCTGTTGTCGTATCCATCCTCCAAGAGGCAA TGTCTGGTTGCGCGGCATCAGCAACAGAAATTACACCGGGCTTGCTCTTGAAAGAGGCTGCTTATGGGGCTGCTGCATATATTTACTATGAGCTTTCAAA CTATCTAAGCTTCAAAGATTGGTTCAATGGTGCCTTATCTCTTGAACTGTCTAATGATCATCATAATATGCTAATCATCCACCGAAAAGTTGCAATTGTA CTGGGGCAATGGGTTTCTGAGATCAAAGATGATACGAAAAGACCTGTGTATTGTGGATTGATCAAATTGCTACAAGACAAAGACCTGTCAGTCAAGCTAG CAGCTTGTCGATCTCTGTGTTTCCATATTGAAGATGCCAACTTTTCAGAGCACCAATTTATGGATCTTCTTCCTGTTTGCTGGGACTCGTGTTTCAAGTT GTTTGATGATGTTGAAGAATTTGACTCAAAGATTCAGGTTTTGAACTTGATCACCATTCTTATTGCACACGTCGGTGAGATCATTCCATTTGCGAACCAG TTGGTGCAGTTCTTTCAGGAGGGCTGGGACGAATCTTCTGGCGAGAGTCTACTGCAAATGCAGCTTCTCGCTGCTCTAAAGAATTTTGTTCTCGCACTTG GTTACCGATCCCCTAATTGCTACAGCGTACTGCTACCTATTCTGCAAAGTGGAATCGATATAAATAACCCAGATGAACTCAACCTTCTAGAGGACAGTAT GCTGTTGTGGGAAGCCACACTTTCTAATGCTCCTGCGATGGTACCTCAGTTGTTAACGTTTTTCCCTTCTTTAGTGGGAATCCTGGATAGAAACTTCGAC CATTTGCAGGTTGCTGTTGATATCATTGAGGATTATGTGTTATTGGGGGGAACCGAATTTCTGAACATGCATGCTTCTGCTGTTGCGAAAATTCTGGATC TGATAGTCGGGAATGTCAACAATGAAGGGATGCTTTCCGTTCTTCCTGTGATTGATATGTTAATCCAGTGTTTCCCCATGGAACTTCCTCCACTTATCAA CGGTACCTTACAAAAACTAATTATCGTCTGTTTGGGCGGAGGAGATGAGCTCGATCCTTCTAAAGTAGCAGTTAAAGCATCTTCATCCGCGATCCTCGCA AGAATATTGGTAATGAATACCAACTATCTTGCCCAGTTAACGTCAGAACCATCGCTTCCTCTACTCCTCCAGCAAGCAGGTATACCAGTCCCGGAGAACA CACTTCTATCACTAGTCGACATTTGGCTCGACAAGTTTCAGGTGGATAATGCATCGCCCCACCAGAGAAAAGCATTCGGACTGGCACTTTCGATAATCTT GACGCTAAGGCTGCCTCAGGTCCTTGACAAGCTTGATCTGATACTTAGTGTGTGCACAACCATTATACTTGGAGATACTGATGAGTTTACCGATGGAGAT TCCAGTGGTGATAACATGAGTTCCGGCAGATCCCATGGGGAGGGCACGATCATGAGTAAAGAACTTCGAAGAATTCAGATTGAGGATTCGGACCCCATCA ACCGGTTGTCATTAGGGAACATAGTGAAAGAGAACCTTCAAACGTGTGCTGCAGTCCACGGCGAAGCCTTCAATCCAGCTATCAGTCGAATGCATCCCTC AGCATTTGCCCAACTGAAGCAAGCTCTGAAGATGCCATAA
AA sequence Show only first row Show all	>Lus10004753 pacid=23162929 polypeptide=Lus10004753 locus=Lus10004753.g ID=Lus10004753.BGIv1.0 annot-version=v1.0 MALSTSDLPAIYSLLTNSMSGDVSVRRPAEAALLQSERRPGYCSCLMEVIIAKDLAAQVGVRLMATVNFKNCINRHWRSRRDSTGMSIEEKSHLRQKLLS HLREEDYKIALLLAVVISKIARIDYPKDWPELFTILAQQLQSADVLTSHRIFMILFRTLKELSTKRLPADQKNYAQISAQLFDYCWHLWQSDMRTILHSF STLAQNCDPNAEQQQDELYLISERWLLCLKIIRQLILSGFPSDAKAVQEVRPVKEVSPMILNAIQSLLPYYSSFKKGNRNMWDFLKKATTKMMKVLVAIQ NKHPYSFSDKSVLPPVLDFCLNKITAPDEELFSFEQFLIQCMVMANAVGGVLTSLLPSERIILLCNVLIRRYFVLTAADLEEWSRSPESFHHKQDMVQWT EKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMSGCAASATEITPGLLLKEAAYGAAAYIYYELSNYLSFKDWFNGALSLELSNDHHNMLIIHRKVAIV LGQWVSEIKDDTKRPVYCGLIKLLQDKDLSVKLAACRSLCFHIEDANFSEHQFMDLLPVCWDSCFKLFDDVEEFDSKIQVLNLITILIAHVGEIIPFANQ LVQFFQEGWDESSGESLLQMQLLAALKNFVLALGYRSPNCYSVLLPILQSGIDINNPDELNLLEDSMLLWEATLSNAPAMVPQLLTFFPSLVGILDRNFD HLQVAVDIIEDYVLLGGTEFLNMHASAVAKILDLIVGNVNNEGMLSVLPVIDMLIQCFPMELPPLINGTLQKLIIVCLGGGDELDPSKVAVKASSSAILA RILVMNTNYLAQLTSEPSLPLLLQQAGIPVPENTLLSLVDIWLDKFQVDNASPHQRKAFGLALSIILTLRLPQVLDKLDLILSVCTTIILGDTDEFTDGD SSGDNMSSGRSHGEGTIMSKELRRIQIEDSDPINRLSLGNIVKENLQTCAAVHGEAFNPAISRMHPSAFAQLKQALKMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08960			ARM repeat superfamily protein...		Lus10004753 [exp]	0	1
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	3.9	0.9450
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	4.1	0.9495
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10029800 [exp]	6.6	0.9448
AT3G50370			unknown protein		Lus10009355 [exp]	7.1	0.9448
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	7.3	0.9266
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10020724 [exp]	7.7	0.9428
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10022666 [exp]	8.8	0.9349
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	9.4	0.9477
AT3G50370			unknown protein		Lus10019351 [exp]	12.4	0.9334
					Lus10021651 [exp]	13.1	0.9406

Compare expression of checked genes

Lus10004753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.