Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17486 272 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 269 / 6e-92 PPPDE putative thiol peptidase family protein (.1) AT1G47740 216 / 1e-70 PPPDE putative thiol peptidase family protein (.1.2) AT2G25190 209 / 5e-68 PPPDE putative thiol peptidase family protein (.1) AT1G80690 203 / 5e-66 PPPDE putative thiol peptidase family protein (.1) AT5G25170 199 / 9e-65 PPPDE putative thiol peptidase family protein (.1) AT4G31980 197 / 2e-59 unknown protein AT4G25680 87 / 1e-20 PPPDE putative thiol peptidase family protein (.1) AT4G25660 85 / 8e-20 PPPDE putative thiol peptidase family protein (.1) AT3G07090 59 / 2e-10 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007844 [exp] 405 / 5e-146 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10040170 [exp] 369 / 1e-131 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 290 / 3e-96 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10043293 [exp] 230 / 2e-76 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10019437 [exp] 229 / 4e-76 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10013657 [exp] 227 / 3e-75 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 217 / 3e-71 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 216 / 5e-71 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2) Lus10033030 [exp] 216 / 1e-70 AT4G17486 225 / 3e-74 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154400 [exp] 302 / 6e-105 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 298 / 2e-103 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.018G070600 [exp] 226 / 3e-75 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 221 / 9e-73 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 220 / 2e-72 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 219 / 3e-72 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G154400 [exp] 218 / 5e-72 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 218 / 8e-72 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.004G151200 [exp] 217 / 2e-71 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2) Potri.018G021700 [exp] 212 / 2e-69 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10004755 pacid=23162957 polypeptide=Lus10004755 locus=Lus10004755.g ID=Lus10004755.BGIv1.0 annot-version=v1.0 ATGCATTTCTTCCCTTTCAGCTCAAGCTCACACAAGGATGGCGGGAGTCGTGTTCCGGTGTATTTGAACGTGTACGATCTCAATACTGTGAATAATTACC TCTATTGGTTCGGCCTAGGGATCTTCCATTCCGGCATTGAAGTCCATGGTATGGAGTTTAGTTTCGGAGCACACGAGTACCCTAGCAGTGGAATATTTGA GGTGCAACCACGAAGTTGTCCAGGCTTCATCTTCAGACGTGCAGTATTGATCGGTAAGACCAGCTTGTCCCGCTCAGAAGTTCAGGAAATGATGGAGCAT CTCTCCGCCGAATTCCATGGTGACTGTTATCATTTGATTTCGAAGAACTGCAATCATTTCACGGAAGAAGCTTGCTTGAAACTAACGGGGAAGGCAGTCC CTGGATGGGTTAATCGGTTGGCTCGATTAGGTTCTTTCTGCAATTGTCTACTGCCAGAAAGCATTAAGGTTGCACCAGTTCAACATTTACCCGAACGCGC AGCACATAACAATGACGACGATGCCACAGCATCGATCCTATCATATGCCTCATTGGCAAGCGACGAAGATAACTCGAATCACAATCTCTTGCCCATACCC AATGGTGAGGTCTCGTTTGTGAAAGAAAAACCTATCAACCTATCAGGCTAG
AA sequence Show only first row Show all	>Lus10004755 pacid=23162957 polypeptide=Lus10004755 locus=Lus10004755.g ID=Lus10004755.BGIv1.0 annot-version=v1.0 MHFFPFSSSSHKDGGSRVPVYLNVYDLNTVNNYLYWFGLGIFHSGIEVHGMEFSFGAHEYPSSGIFEVQPRSCPGFIFRRAVLIGKTSLSRSEVQEMMEH LSAEFHGDCYHLISKNCNHFTEEACLKLTGKAVPGWVNRLARLGSFCNCLLPESIKVAPVQHLPERAAHNNDDDATASILSYASLASDEDNSNHNLLPIP NGEVSFVKEKPINLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17486			PPPDE putative thiol peptidase...		Lus10004755 [exp]	0	1
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	14.5	0.8740
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	18.6	0.8717
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	21.0	0.8644
AT2G44140			Peptidase family C54 protein (...		Lus10025609 [exp]	34.2	0.8641
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	34.4	0.8589
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	37.6	0.8614
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10002917 [exp]	38.2	0.8576
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	42.4	0.8611
AT3G52220			unknown protein		Lus10039101 [exp]	47.2	0.8586
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001316 [exp]	48.4	0.8579

Compare expression of checked genes

Lus10004755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.