Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53110 71 / 1e-13 RING/U-box superfamily protein (.1) AT2G46495 44 / 7e-05 RING/U-box superfamily protein (.1) AT2G25410 44 / 8e-05 RING/U-box superfamily protein (.1) AT2G46494 42 / 0.0002 RING/U-box superfamily protein (.1) AT1G28040 41 / 0.0006 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007845 [exp] 380 / 4e-134 AT5G53110 79 / 9e-17 RING/U-box superfamily protein (.1) Lus10014923 [exp] 54 / 6e-08 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154500 [exp] 152 / 1e-44 AT2G25410 121 / 5e-32 RING/U-box superfamily protein (.1) Potri.003G080200 [exp] 146 / 2e-42 AT2G25410 106 / 4e-26 RING/U-box superfamily protein (.1) Potri.015G017800 [exp] 64 / 1e-11 AT5G53110 389 / 1e-134 RING/U-box superfamily protein (.1) Potri.015G018000 [exp] 61 / 2e-10 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G011500 [exp] 59 / 9e-10 AT5G53110 353 / 2e-120 RING/U-box superfamily protein (.1) Potri.001G091700 [exp] 57 / 4e-09 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1) Potri.015G018200 [exp] 55 / 2e-08 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 54 / 3e-08 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.003G139900 [exp] 54 / 5e-08 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.002G170300 [exp] 53 / 7e-08 AT2G46495 317 / 4e-106 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004756 pacid=23162922 polypeptide=Lus10004756 locus=Lus10004756.g ID=Lus10004756.BGIv1.0 annot-version=v1.0 ATGAAAGCTCAAATCTTTCCTCTCTTCTTCTTCTTCTTCCTCTTCACCACTTCACAATCCTTCTCATGCCCACCAATCAAATGCAACCCACAAGGCCCTG AAATCCACTACCCATTCAGAGAAACCACCCACCACCACCCCCACTGCGGTCAGGGTGGGCCCGGGTTCGACCTCACTTGCCACCAGAACACAACCAAAAT CCAGTTGTCGTCGGTTGACTTGCTGGTCAAGTCAATCGACTACGTTGACTCTCGGGTCGAACTTCTCGACCCGAGAAGGTGTGTCCATGGAGTGTTCATG GACCTCAATCTAACCGGTACCCCGTTCGAGTATGCCTATAAGGTGGAGGATTTCGAGTACGTGAACTGCTCAAGAAGGGTCGTCGGGTTGGATGAAGTGG CGTGCTTGAGTGGTGAGGATTCCCATGTTTATACTCTGGAGAAAGGAAGTAGTGATGATCGTGAGAGGTTTGGTTTTTGTAAGGAGATGAAGACTGTTGC TATTCCTTTTGGTTACAGTCTTTATCTTGCTGATGACGGGTTCGGTCTTGGGTTGATCTGGACCGTTGATGGTGGTGGTGAGATCATGGGAAATGGGTTG CTTTCTAAAGGGTTGTCAACAAACAACTGCATACTCTGCAGCAAGTGGTTGAAGGTTGCGGTATGCATTGTCTTGGTAGCATTGCTTTGTGGCGTCAAAA TGTACTGTCACACCAGCAGAGTGGAACAACAGTTGGAGGAGATTGGAAGATCTCATCTGCTTGTAGATCAGTCACTCAAACGCCGTGAAGGAGTAATTTG A
AA sequence Show only first row Show all	>Lus10004756 pacid=23162922 polypeptide=Lus10004756 locus=Lus10004756.g ID=Lus10004756.BGIv1.0 annot-version=v1.0 MKAQIFPLFFFFFLFTTSQSFSCPPIKCNPQGPEIHYPFRETTHHHPHCGQGGPGFDLTCHQNTTKIQLSSVDLLVKSIDYVDSRVELLDPRRCVHGVFM DLNLTGTPFEYAYKVEDFEYVNCSRRVVGLDEVACLSGEDSHVYTLEKGSSDDRERFGFCKEMKTVAIPFGYSLYLADDGFGLGLIWTVDGGGEIMGNGL LSKGLSTNNCILCSKWLKVAVCIVLVALLCGVKMYCHTSRVEQQLEEIGRSHLLVDQSLKRREGVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53110			RING/U-box superfamily protein...		Lus10004756 [exp]	0	1
AT1G60783			unknown protein		Lus10026693 [exp]	5.6	0.8773
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10042815 [exp]	9.5	0.8404
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	11.7	0.8332
AT2G36650			unknown protein		Lus10014389 [exp]	15.6	0.8668
AT2G43990			unknown protein		Lus10008165 [exp]	17.0	0.8373
AT2G41110		ACAM-2, ATCAL5,...	calmodulin 2 (.1.2)		Lus10021487 [exp]	19.1	0.8560
					Lus10023082 [exp]	19.3	0.8041
					Lus10003556 [exp]	21.7	0.8551
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	21.8	0.8522
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	25.2	0.8480

Compare expression of checked genes

Lus10004756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.