Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47330 336 / 5e-111 alpha/beta-Hydrolases superfamily protein (.1) AT2G44510 308 / 7e-100 CDK inhibitor P21 binding protein (.1) AT4G17483 307 / 7e-100 alpha/beta-Hydrolases superfamily protein (.1) AT3G60340 299 / 4e-96 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G17480 295 / 6e-95 alpha/beta-Hydrolases superfamily protein (.1) AT5G47340 292 / 7e-94 alpha/beta-Hydrolases superfamily protein (.1) AT4G17470 276 / 5e-88 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G47350 251 / 5e-78 alpha/beta-Hydrolases superfamily protein (.1) AT5G03830 167 / 4e-47 CDK inhibitor P21 binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004375 [exp] 317 / 2e-103 AT3G60340 411 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040173 [exp] 316 / 6e-103 AT3G60340 409 / 4e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042902 [exp] 290 / 1e-92 AT3G60340 442 / 2e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028200 [exp] 284 / 7e-90 AT3G60340 439 / 3e-155 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461100 [exp] 350 / 2e-116 AT2G44510 266 / 6e-88 CDK inhibitor P21 binding protein (.1) Potri.003G080100 [exp] 348 / 1e-114 AT3G60340 434 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G154600 [exp] 342 / 1e-112 AT3G60340 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G137200 [exp] 295 / 1e-94 AT3G60340 462 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02089 [flax] [poplar] Palm_thioest Palmitoyl protein thioesterase
Representative CDS sequence Show only first row Show all	>Lus10004757 pacid=23162951 polypeptide=Lus10004757 locus=Lus10004757.g ID=Lus10004757.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCATCATCATCATCCATTGTCTTCTTCTTCTTCCTCTCGATTGCTGGTTCTGCCATTGTTGCAAACTCCATCCCCTTCATCGTCC TCCATGGGATTGGAGATGAATGCAAGAGTGGGAAAGTCAGCCATTTCACTCAACAGCTCGTCAATCTCTCTGGCTCCCCTGGTTCTTGCCTGGAAGTGGG AAATGGGTACTTGGATTCTTGGTTTATGCCCATGAAGAAGCAGGTGCAACTGGTTTGCAACAATGTGAAGAAGATGGAAGAACTAAGCAATGGTTACAAC ATTGTTGGACTCTCTCAGGGCAACTTAATCAGTCGAGCTGTGATCGAGACCTGTGTCGATGGCCCTCCTGTTGTTAACTACATTTCATTGGCCGGTCCAC ATGCTGGCATTGCTTCAGTTCCTCTCTGCGGTAATGGTACATGGTGCCAACTCGCCGATGAACTCATAAAGTCTGGTATCTACACCGATTTCGTCCAGGA TCACCTGGCTCCGAGCGGGTACCTGAAACTACCCGATGACATGTCTGGTTACTTGAGCAAATCAAAGTTCCTTCCTCAGCTGAACAATGAACTGCCTGAA GGAAGGAACTCAACGTTCAAGCAAAGGCTCACTAGCTTGAAGAACTTGGTGCTAATCATGTTCGAAGGAGACGAGGTGATAGTACCCAAGGAAACGGCCT GGTTCGGTTTCTACCCCGACGGGCAGTTCAGCCCGGTTCTACCGGTTCAGCAGGGTTTAGTTTCAAACGGTGTCCGAAATTCAGACCTCCGAAATCCTTC CTCCTGCTCCTCCTCCCTTCGCGCCTTTCTCCGCCGTCGACGCAGCTCATCGCACTTCTCTTCTCTTCTCAGTACTTACTCCTCAAGTCCTCAAGTCCTC TTCCCTTCATCCTCCACCGCCGAAGAAATCTCTACTGTTTCTGTGAGAGATTGCATAGGGATGAAAAGGCCTCGATCAGGTTGGGCAGCTAGGCCAGTGA CGTTCTCCCCATTTGCACGCTCAGTTGCTAATATCGTGTCAGCTTCTATGGTTAAGCGACAAACAGTCGAGAAGAAAATCGACGAGCCTGCTCAAGATGA TCCAAATGAAGAGTCAAGCGAGGAGAACGTCGAAGAGACAAAGAGTGAATCAGAGAGTGAATCAGACGAAGAAAGTTCTGATGGAGTTGTGCAGGCAGAT TTCGCCTTCTTCGATCCGAAACCTGAATACTTCCATGGAGTGAAGACGTTGCTGCAAACTTATCTCGATAAAAAGGAGTGGGATTTGAGCGGCTTTGTGG ATTTGATACTAGAGCAAACCACCGTTGGGACAGTTGTTAAACTGGAGGATGATGAAGATGATGGGCTTTTCTCAGTCGCGACTGCCTTAAACGTGGCGAG ATATAAGGACCATAACTGCATTAAGGAGCTGCAAGAGTATGCGTTGAAAGTATGCCATGAGACTAAGCTAGCGAACAAATTGAGATCACTTTTCAGCACC GAAGCACACGGTGTTGGTCTCTTGGTCTCACAGCGGGTGGTTAATCTTCCTCCTCAACTCTTGCCGCCTCTTTATGATTCGCTCTTTGACGAAATCTCAT GGGCTCTGGAAGATGAGCCAACAGAGCAACTTCGGAACTCCTTCCGCTTTAAGACTTATTTAATCATTAGTAAAATGTATAAGCACAAGAAAGCAAATGA TAAAATGGGAAAGGCGGTTCAAGAAGAGGAACCAGTAATATACGTGAAGGCCGAGGACGAGCTTTTCCACGAGCTGTCTACTTGGTCATTCACTTTCCCT CTGGAAATCCAGCACGTCACCACCAGTGAGGCAAGACTTTTATTTCTGCATCTAAAGAACTACACATCAATGGGGTTAGTCATGGCTGTCGACGCAAACA AAATCCCGAAATTTCGACAGCAGCTTCGCTCTCTCATCGAAGACTAA
AA sequence Show only first row Show all	>Lus10004757 pacid=23162951 polypeptide=Lus10004757 locus=Lus10004757.g ID=Lus10004757.BGIv1.0 annot-version=v1.0 MASSSSSSSSIVFFFFLSIAGSAIVANSIPFIVLHGIGDECKSGKVSHFTQQLVNLSGSPGSCLEVGNGYLDSWFMPMKKQVQLVCNNVKKMEELSNGYN IVGLSQGNLISRAVIETCVDGPPVVNYISLAGPHAGIASVPLCGNGTWCQLADELIKSGIYTDFVQDHLAPSGYLKLPDDMSGYLSKSKFLPQLNNELPE GRNSTFKQRLTSLKNLVLIMFEGDEVIVPKETAWFGFYPDGQFSPVLPVQQGLVSNGVRNSDLRNPSSCSSSLRAFLRRRRSSSHFSSLLSTYSSSPQVL FPSSSTAEEISTVSVRDCIGMKRPRSGWAARPVTFSPFARSVANIVSASMVKRQTVEKKIDEPAQDDPNEESSEENVEETKSESESESDEESSDGVVQAD FAFFDPKPEYFHGVKTLLQTYLDKKEWDLSGFVDLILEQTTVGTVVKLEDDEDDGLFSVATALNVARYKDHNCIKELQEYALKVCHETKLANKLRSLFST EAHGVGLLVSQRVVNLPPQLLPPLYDSLFDEISWALEDEPTEQLRNSFRFKTYLIISKMYKHKKANDKMGKAVQEEEPVIYVKAEDELFHELSTWSFTFP LEIQHVTTSEARLLFLHLKNYTSMGLVMAVDANKIPKFRQQLRSLIED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47330			alpha/beta-Hydrolases superfam...		Lus10004757 [exp]	0	1
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	1.0	0.8461
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	1.7	0.8071
					Lus10008758 [exp]	2.8	0.7695
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10013839 [exp]	3.5	0.7606
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10038902 [exp]	8.7	0.8083
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	9.5	0.7188
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	12.0	0.7365
AT5G49100			unknown protein		Lus10006504 [exp]	13.9	0.7387
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	15.2	0.7415
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	19.8	0.6974

Compare expression of checked genes

Lus10004757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.