Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16790 92 / 1e-19 hydroxyproline-rich glycoprotein family protein (.1) AT3G60380 57 / 3e-08 unknown protein AT1G72790 45 / 0.0002 hydroxyproline-rich glycoprotein family protein (.1) AT1G15385 39 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007846 [exp] 290 / 1e-93 AT4G16790 97 / 2e-22 hydroxyproline-rich glycoprotein family protein (.1) Lus10007848 [exp] 115 / 2e-27 AT3G10430 73 / 5e-14 F-box and associated interaction domains-containing protein (.1) Lus10007847 [exp] 96 / 3e-21 AT3G10430 76 / 7e-15 F-box and associated interaction domains-containing protein (.1) Lus10004586 [exp] 89 / 4e-19 AT2G27520 45 / 2e-05 F-box and associated interaction domains-containing protein (.1) Lus10011994 [exp] 77 / 7e-15 ND / Lus10019517 [exp] 44 / 0.0002 AT2G26110 148 / 5e-43 Protein of unknown function (DUF761) (.1) Lus10028193 [exp] 44 / 0.0006 AT3G60380 112 / 2e-25 unknown protein Lus10042896 [exp] 43 / 0.0007 AT3G60380 91 / 1e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079900 [exp] 171 / 6e-46 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G155000 [exp] 149 / 4e-38 AT4G16790 114 / 5e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.014G045300 [exp] 54 / 2e-07 AT3G60380 89 / 3e-18 unknown protein Potri.002G136600 [exp] 46 / 6e-05 AT3G60380 86 / 5e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004758 pacid=23162940 polypeptide=Lus10004758 locus=Lus10004758.g ID=Lus10004758.BGIv1.0 annot-version=v1.0 ATGGCGGATCACTTCACAAAACAACAGCAGCAACCGGCGAAATACTACTCACATTTCCTCTACAAGGCGCTCATAGTCTCCGTCTTCATGTTCATCCTCC CTCTCCTCCCTACTCCACAATCCGCGCCTGACTTCATCGGCACCGGTGGCTGGGAGTTCCTCCACCTTGTCTTCGTCGGCATCGCTGTCTCCTACGGTCT CTTCAGCCGCCGTCGTGACGATGGTGACGACCAAAATTCCGATCGGAAAGATTCATCCGCTGCTAACGGTAACCTGAATAATTTCGACGCGGCTCATTGC TATGTCTCGAAGTTTCTGCCGGTTGCATCGGTGTTTGACGATGACGACGATGGAGGAGGAGAAGGCGTCGGTGTGACTACGAAGGTGGAGACGTGGACTA GCCAGTACCTCCGGAACGAGCCCATGGTGGTGGTGGCGGCTGATGATGAGGAAGATGGAGACGGAGGTGGAGAGAATCGGAGGTTTGTGAGGATGGAGAA GCCGTTGTTGCTGCCCATTCGGAGCTTGAAATCAACTGGGTCGGATTCCGATTCTAGATCGGAGGAGGCTGATTCCGTGCTCCGATCACCGATACCGTGG AGGTCTAGGTCAGGGAGGTTTCAAGCTGATAGATCCGCCGCGAATCCGGTAACTACTCCTAGTCCTCCTCCACCTCCCCCGCCGCCGCCACCGTCGGTTG CTTCTTCTTCTCGATCGATCCGGCCGCCGAGAAATCCTCGGAAATCTTCTGCTTCTTCGATTCCCCAGTTCTCATCCGACGAGATACAAGCCAAGAATGC TGAGGATTTCGTCAGGAGGAAAACTATCTTCCGATCTCCTCCACCACCTCCTCCACCACCGCCTCCTCGTTCTGTAAGATCATCCTCAAGGAGGCCGCCT CCTCCTCCCTCAGCCGATCACGATCATCTTCCTCCTGTCAACCGAAGCAATGATCTGGAAGGGATATCGGAGGGGAGTCTCATCAATGTGGAGTTGCCGG CGGTGGGAGATGACCGTGTGGAGAAAGTGGTGGTGGTGGAAGAGGACGATGATGATGATTCGTCGTCGTCGGAGGCGGAGTACGAGGAAGTGAAGGACAA GGTATTGGAATTTCCGTTGCCGGATGAGGGTGATGGATACGACGAAGGAGGATGTTCGCCGCCTCCGCCGCCGGACGTGGACAGGAAAGCCGACGAGTTC ATAGCGAAGTTCAGGGAGCAGATTAGGCTACAGAGAATGGAATCTATTAAGAGAACCGCTGAACAGGCTCATCTCCAATTCCAGGAACCGCCGCCCAGCC CCCGATCTGCCGTTCGACATCTTGATCGAAATCCTCTCTCACCTTCCAGTCAAATCCCTAGTCCGATTCAAATCTGTATCCAAACTCTGGAACCAAATCA TCTCCACCAGCCCCTACCTTGTCACTACATACCGCATCAGGAACCGCCATCCAAACGGCATTATATGCGATCATCTACTGAAGTTTTCTGCACGATAAGC TTCCCTCCTTGTTTTGATTTCTATCTTGAACGCCTAATCAGTGGACCGTGCATCTATCGCGATTCGATCGCTGTATTTACGAGCTATACACTGGAGGACT ACTCGAGTGTCGACATATGGCTTCCGAGTAGTAGTAGTAGTCGTAATGATGAGGAGTTGTGCTGGATCAAACATTCGAGTATAGGACCTTGCCCTCAATT TATGGATGTGTGCGGATGTTGGAACGGCAATCAGCTTGTTGCGTCGGCGATGACACATTCGAATGGTGGTTTTATCGAAAGTGGTGCTGTTGTTTTCGAT ACGCTTAAACGAGAAACCAAAGCTGTACCTGACGTTTCTACGCTGTGGTCACTGTTTACTTGCAAAGAGACTCTGGTTTCCATTCAGTAA
AA sequence Show only first row Show all	>Lus10004758 pacid=23162940 polypeptide=Lus10004758 locus=Lus10004758.g ID=Lus10004758.BGIv1.0 annot-version=v1.0 MADHFTKQQQQPAKYYSHFLYKALIVSVFMFILPLLPTPQSAPDFIGTGGWEFLHLVFVGIAVSYGLFSRRRDDGDDQNSDRKDSSAANGNLNNFDAAHC YVSKFLPVASVFDDDDDGGGEGVGVTTKVETWTSQYLRNEPMVVVAADDEEDGDGGGENRRFVRMEKPLLLPIRSLKSTGSDSDSRSEEADSVLRSPIPW RSRSGRFQADRSAANPVTTPSPPPPPPPPPPSVASSSRSIRPPRNPRKSSASSIPQFSSDEIQAKNAEDFVRRKTIFRSPPPPPPPPPPRSVRSSSRRPP PPPSADHDHLPPVNRSNDLEGISEGSLINVELPAVGDDRVEKVVVVEEDDDDDSSSSEAEYEEVKDKVLEFPLPDEGDGYDEGGCSPPPPPDVDRKADEF IAKFREQIRLQRMESIKRTAEQAHLQFQEPPPSPRSAVRHLDRNPLSPSSQIPSPIQICIQTLEPNHLHQPLPCHYIPHQEPPSKRHYMRSSTEVFCTIS FPPCFDFYLERLISGPCIYRDSIAVFTSYTLEDYSSVDIWLPSSSSSRNDEELCWIKHSSIGPCPQFMDVCGCWNGNQLVASAMTHSNGGFIESGAVVFD TLKRETKAVPDVSTLWSLFTCKETLVSIQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16790			hydroxyproline-rich glycoprote...		Lus10004758 [exp]	0	1
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10019452 [exp]	1.4	0.9451
AT4G16790			hydroxyproline-rich glycoprote...		Lus10007846 [exp]	1.4	0.9274
AT5G06850			C2 calcium/lipid-binding plant...		Lus10023823 [exp]	3.9	0.9216
AT5G35740			Carbohydrate-binding X8 domain...		Lus10039059 [exp]	5.9	0.9090
AT5G06850			C2 calcium/lipid-binding plant...		Lus10021030 [exp]	7.3	0.8821
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10016566 [exp]	10.2	0.8862
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	11.0	0.9098
AT5G17680			disease resistance protein (TI...		Lus10014829 [exp]	11.2	0.9000
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	14.4	0.8588
AT1G68430			unknown protein		Lus10034103 [exp]	15.9	0.8754

Compare expression of checked genes

Lus10004758 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.