Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16780 281 / 2e-94 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT5G47370 256 / 1e-84 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT3G60390 252 / 3e-82 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT4G17460 249 / 1e-81 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 225 / 7e-72 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT5G06710 215 / 1e-67 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 196 / 4e-61 HD HAT22 Homeobox-leucine zipper protein family (.1) AT2G22800 193 / 4e-60 HD HAT9 Homeobox-leucine zipper protein family (.1) AT2G01430 160 / 3e-47 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 133 / 1e-37 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007849 [exp] 480 / 4e-172 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 285 / 3e-95 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 276 / 2e-91 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10021064 [exp] 223 / 9e-72 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 219 / 4e-69 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 209 / 5e-65 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 207 / 2e-64 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 159 / 2e-47 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 157 / 2e-46 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079800 [exp] 328 / 1e-112 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.001G155100 [exp] 322 / 7e-110 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.014G045100 [exp] 273 / 9e-91 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.002G136400 [exp] 271 / 6e-90 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1) Potri.016G059000 [exp] 220 / 1e-69 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.006G193700 [exp] 219 / 3e-69 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.016G058600 [exp] 213 / 1e-68 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.005G147100 [exp] 216 / 2e-68 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.007G008200 [exp] 213 / 9e-68 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.001G229700 [exp] 213 / 1e-66 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF04618 [flax] [poplar] HD-ZIP_N HD-ZIP protein N terminus
Representative CDS sequence Show only first row Show all	>Lus10004759 pacid=23162935 polypeptide=Lus10004759 locus=Lus10004759.g ID=Lus10004759.BGIv1.0 annot-version=v1.0 ATGGCGGAGAAGGAAGATTTACGCCTCAGCTTGAGCTTGAGCTTCCCCGATCACCGCTCCTCGACGACGACAGCACAGCAGCTGAACCGCCTCCCTTCTG TTTCCTCATCTTCCTCCGCCGCCGGAAAGCTCTTCGCAGCCGGAGCCAACTCCGCCGCCTTGTCATGGTTGAAGCACCACAATCACAATCACTCCGCTCT CGTATTGAATCCTTCCTCCGATCTGGAATCGGAGAGGAGCAACAGCGAGAGCACGCGCTTATTCCTCCGGGGGATCGACGTCAACCGGCTACCAGCGGTT GCTGCTGTAGTCGATTGCGATGAGGAGGCGGGAGTTTCGTCGCCGAACAGTACGGTGTCGAGTATAAGCGGGAAGAGGAGCGAGAGGGAAGCCGGCGGAG AGGATCTCGACGGCGAACGAACTTCCTCCCGCGGGGTCAGCGACGAGGAAGACGGTAGCGATACTTCGAGGAAGAAGCTCCGCCTCTCGAAAGATCAGTC CGCCGTTCTTGAAGAGAGCTTCAAAGAGCACAGCACTCTCAATCCCAAGCAAAAGCAAGCACTAGCTAAGCAGCTAGGCCTCAGGCCAAGACAAGTGGAG GTGTGGTTCCAGAACAGAAGAGCTAGGACGAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCCTGAAACGGTGCGCGGAGAATCTAACGGAGGAGAATC GCCGGCTGCAGAAGGAAGTACAAGAGCTGAGAGCACTGAAGCTCTCCCCGCAATTCTACATGCAGATGACTCCACCAACCACGCTCACCATGTGTCCTTC GTGTGAGCGTGTCGCGGTCCCGCCACCGTCCTCGTCAGCGTCCACATCGTTGCCGCCACCTGTCAATGCTACAAAACCGTTGGGCCAAACGGCCCAACAC CACCGGCCCACGAGTGTTCTCAGCCCGTGGGCGGCTGGTGGAGCGTTCAGTGCGCTCCGTCCCCGGTGGTAG
AA sequence Show only first row Show all	>Lus10004759 pacid=23162935 polypeptide=Lus10004759 locus=Lus10004759.g ID=Lus10004759.BGIv1.0 annot-version=v1.0 MAEKEDLRLSLSLSFPDHRSSTTTAQQLNRLPSVSSSSSAAGKLFAAGANSAALSWLKHHNHNHSALVLNPSSDLESERSNSESTRLFLRGIDVNRLPAV AAVVDCDEEAGVSSPNSTVSSISGKRSEREAGGEDLDGERTSSRGVSDEEDGSDTSRKKLRLSKDQSAVLEESFKEHSTLNPKQKQALAKQLGLRPRQVE VWFQNRRARTKLKQTEVDCEFLKRCAENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPPPSSSASTSLPPPVNATKPLGQTAQH HRPTSVLSPWAAGGAFSALRPRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004759 [exp]	0	1
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	2.0	0.8129
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10016496 [exp]	7.9	0.7971
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	10.1	0.8103
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10009998 [exp]	12.6	0.7093
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10017617 [exp]	13.5	0.7006
AT1G55090			carbon-nitrogen hydrolase fami...		Lus10000200 [exp]	14.8	0.6726
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	17.9	0.7364
AT3G20300			Protein of unknown function (D...		Lus10002334 [exp]	18.0	0.7832
AT3G18950			Transducin/WD40 repeat-like su...		Lus10023836 [exp]	18.4	0.7922
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	23.7	0.7940

Compare expression of checked genes

Lus10004759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.