Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64780 430 / 6e-150 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 384 / 4e-132 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT3G24300 371 / 5e-127 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT4G28700 369 / 7e-126 AMT1;4 ammonium transporter 1;4 (.1) AT3G24290 361 / 3e-123 AMT1;5 ammonium transporter 1;5 (.1) AT2G38290 49 / 3e-06 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000823 [exp] 380 / 1e-134 AT1G64780 312 / 3e-105 ammonium transporter 1;2 (.1) Lus10023705 [exp] 362 / 2e-123 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10004403 [exp] 338 / 3e-114 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10018229 [exp] 319 / 7e-107 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1) Lus10040677 [exp] 191 / 1e-60 AT1G64780 225 / 6e-72 ammonium transporter 1;2 (.1) Lus10020248 [exp] 58 / 3e-09 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 55 / 3e-08 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 52 / 4e-07 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 51 / 6e-07 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023600 [exp] 432 / 1e-150 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.008G173800 [exp] 414 / 1e-143 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.010G063500 [exp] 402 / 6e-139 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 392 / 2e-135 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1) Potri.002G255000 [exp] 377 / 1e-129 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.009G045200 [exp] 312 / 3e-104 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1) Potri.006G247800 [exp] 50 / 1e-06 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 47 / 7e-06 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10004760 pacid=23140490 polypeptide=Lus10004760 locus=Lus10004760.g ID=Lus10004760.BGIv1.0 annot-version=v1.0 ATGGTTGGTGGGATTGCTGGCCTTTGGGGTGCTCTCATTGAAGGTCCGAGGATCGGCCGGTTCGACAGGTCTGGCCGTTCGGTTGCTTTACGTGGACATA GTGCTTCATTGGTTGTGCTCGGTACATTCTTGTTGTGGTTCGGGTGGTATGGATTCAACCCTGGTTCGTTTTTAATCATTGTGAAAGGGTATGGTGAAAG TGGAGGACACTATGGACAATGGAGCGCAATTGGAAGGACAGCTGTCACGACCACGTTGGCCGGGTCGACAGCTGCTCTGACGACTCTCTTCAGCAAGAGG CTAATGGTTGGCCACTGGAATGTAACCGATGTTTGTAACGGTTTGCTTGGTGGGTTTGCCGCTATAACCTCGGGTTGCTCGGTGGTCGAACCATGGGCGG CAATCATTTGCGGGTTTGTAGCTGCCTGGGTTCTAATCGGGTTCAACAAGCTAGCCGAAATATTCAAATACGACGACCCGCTCGAAGCAGCCCAATTACA CGGCGGGTGTGGCGCGTGGGGGTTACTCTTCACCGGACTATTCGCCACCAAGAAATTGGTCAACGAGGTATACCCGGGCAACCCGAGTCGACCGTTCGGG TTGTTTATGGGAGGAGGAGGGAAGCTGTTGGCCGCCCAGGTTGTCCAGATATTGGTGATCGTTGGTTGGGTGAGCGCCACGATGGTCCCACTGTTTTACG GGCTTCACAAGCTGAACTTGTTGAGGATATCGGGGGAGGATGAGGTGGCGGGGATGGATATGACTAGGCACGGAGGGTTTGCTTACGCGTACACCGACGA GGATGACCTGTCACTGAAGCCTACAGGATTCATGATGAGGAGGATTGAGCCTAGCAATGGAAGCACCCCCAACCTGAACCAGAGTCCCTCTGGGAACAAC GTGTGA
AA sequence Show only first row Show all	>Lus10004760 pacid=23140490 polypeptide=Lus10004760 locus=Lus10004760.g ID=Lus10004760.BGIv1.0 annot-version=v1.0 MVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFLIIVKGYGESGGHYGQWSAIGRTAVTTTLAGSTAALTTLFSKR LMVGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAAWVLIGFNKLAEIFKYDDPLEAAQLHGGCGAWGLLFTGLFATKKLVNEVYPGNPSRPFG LFMGGGGKLLAAQVVQILVIVGWVSATMVPLFYGLHKLNLLRISGEDEVAGMDMTRHGGFAYAYTDEDDLSLKPTGFMMRRIEPSNGSTPNLNQSPSGNN V

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10004760 [exp]	0	1
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10000823 [exp]	1.0	0.9757
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	1.4	0.9477
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	2.4	0.9448
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	5.0	0.8492
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	8.4	0.8085
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	21.9	0.8259
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10007899 [exp]	23.0	0.8529
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	31.0	0.8250
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	34.2	0.7938
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	37.6	0.8165

Compare expression of checked genes

Lus10004760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.