Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24300 211 / 3e-67 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 208 / 5e-66 AMT1;5 ammonium transporter 1;5 (.1) AT4G13510 208 / 5e-66 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT1G64780 204 / 2e-64 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 202 / 1e-63 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003096 [exp] 254 / 8e-88 AT3G24300 301 / 4e-101 ammonium transporter 1;3 (.1) Lus10004403 [exp] 192 / 4e-60 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10023705 [exp] 192 / 8e-60 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10018229 [exp] 146 / 2e-42 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G049925 [exp] 235 / 7e-80 AT4G13510 258 / 4e-84 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.019G023600 [exp] 233 / 1e-75 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.002G255000 [exp] 205 / 9e-65 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.010G063500 [exp] 201 / 2e-63 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 199 / 2e-62 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1) Potri.008G173800 [exp] 195 / 7e-61 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.009G045200 [exp] 150 / 4e-44 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10004761 pacid=23140475 polypeptide=Lus10004761 locus=Lus10004761.g ID=Lus10004761.BGIv1.0 annot-version=v1.0 ATGGCATCTTTAACCTGCTCAGCTTCAGATCTAGCGTCCCTTCTATCAACCACTCAAAACTCCACCCAAGCAGCAACCTACCTCTGCTCCCAACTCTCCT CCATTTCCAACCAGCTCTCCGACACAAACTATGCAATCAACAACACTTACCTCCTCTTCTCCGCCTACTTGGTCTTCGCCATGCAGCTCGGATTCGCCAT GCTTTGCGCGGGCTCCGTCCGGGCGAAGAACACCATGAACATCATGCTCACCAACGTCCTCGACGCAGCTGCAGGCGGCCTCTCCTACTACCTTTTCGGC TACGCCTTAGCCTTTGGCGCCCCTAGCAATGGCTTCATCGGCCGGCACTTCTTTGGCCTTCATGATTTTCCTTCTCCGACGGCTGATTACAGCTTCTTCC TCTACCAGTGGGCTTTCGCCATTGCCGCGGCAGGAATCACCAATCACTAG
AA sequence Show only first row Show all	>Lus10004761 pacid=23140475 polypeptide=Lus10004761 locus=Lus10004761.g ID=Lus10004761.BGIv1.0 annot-version=v1.0 MASLTCSASDLASLLSTTQNSTQAATYLCSQLSSISNQLSDTNYAINNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFG YALAFGAPSNGFIGRHFFGLHDFPSPTADYSFFLYQWAFAIAAAGITNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	0	1
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10000823 [exp]	1.4	0.9565
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	2.4	0.9159
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10004760 [exp]	2.4	0.9448
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	5.7	0.8053
AT4G16563			Eukaryotic aspartyl protease f...		Lus10008513 [exp]	11.0	0.7291
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	14.5	0.7197
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Lus10020380 [exp]	14.9	0.7204
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10033288 [exp]	20.4	0.7400
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	20.8	0.7520
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	28.5	0.7159

Compare expression of checked genes

Lus10004761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.