Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37360 292 / 1e-98 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003097 [exp] 314 / 8e-108 AT5G37360 246 / 3e-81 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050300 [exp] 320 / 2e-109 AT5G37360 295 / 1e-99 unknown protein Potri.019G023700 [exp] 319 / 3e-109 AT5G37360 327 / 4e-112 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004762 pacid=23140488 polypeptide=Lus10004762 locus=Lus10004762.g ID=Lus10004762.BGIv1.0 annot-version=v1.0 ATGGCTGCGCTTCTCCATTTCCAATGTCTTCCCTCGGGTCTTCTTCCCCGCCGCTCTCTACGTAACCCTACCTTCCGTGCTCCTGCTTCTCTGAAACTAC AGAAGTTGATGAGATCAAAGCCTGGTGTTACTCCGTTGCTTGCTGTCACTGAATCGTCGGAAGGTTCTACTCAGTCTACTGGCCCTTCTCTTCAGTCTCT TCTCCTTGAGCTATCCGATAGTTTTGATCTTCCGTCGGATTATTTCAGTCAACTGCCTAATGATCTTCGGTTGGATTTGAATGATGCGGCTTTTGATCTA TCAAATGGACCTGTTATTGATGAGTGTGGTCAAGAGCTTGGAAACCTCCTGTTAAATCTTTCTCGAGCATGGGAGCGATCTGACATGTCAGCTACACGTG ATTTGGCAAGTAAACTTCCTGCTATGGAGGGCACCTTGACAGGGAGGGCTAAATCAGGCAAGACGCGCTTACTATCATCTGGAAGGAGATTCCAGTCGAT GGGACAGTATGGTCAAGGTGAAATGCAGAAGATTGCTCAGGCAATGACTACAACTGGGAAGTTTCTAGTTGCAAGTCCAACTGAAGAAACAATTGACAAA GAACCGATGAACGAAACCAAAGTTTTCAAGTTCGGAGAACTTCAGGTTGCAATAACGCCAGCGAAAGCTAACATTGGGGCTGCCCTAGGAGCTGTTTTCG GTATTCTATCTTGGGAACTAGCCCAGGGTGTTCAAAGCATTCCAGAGAGCTCTTTACAGTATGCCAATGACAATGCATTGCTGCTGGCTAAGTCTCTAAG AGGAGTACTACTCGCACTTTGCTACTCGTCAACAGGTTTGTCAGCTATGACCTGTGTGGGGCTTGTCATTTTGGCAAGGCAGCTGAAGTCAGAGGACAAG TGA
AA sequence Show only first row Show all	>Lus10004762 pacid=23140488 polypeptide=Lus10004762 locus=Lus10004762.g ID=Lus10004762.BGIv1.0 annot-version=v1.0 MAALLHFQCLPSGLLPRRSLRNPTFRAPASLKLQKLMRSKPGVTPLLAVTESSEGSTQSTGPSLQSLLLELSDSFDLPSDYFSQLPNDLRLDLNDAAFDL SNGPVIDECGQELGNLLLNLSRAWERSDMSATRDLASKLPAMEGTLTGRAKSGKTRLLSSGRRFQSMGQYGQGEMQKIAQAMTTTGKFLVASPTEETIDK EPMNETKVFKFGELQVAITPAKANIGAALGAVFGILSWELAQGVQSIPESSLQYANDNALLLAKSLRGVLLALCYSSTGLSAMTCVGLVILARQLKSEDK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37360			unknown protein		Lus10004762 [exp]	0	1
AT3G10060			FKBP-like peptidyl-prolyl cis-...		Lus10027729 [exp]	1.4	0.9648
AT4G31115			Protein of unknown function (D...		Lus10026864 [exp]	2.0	0.9599
AT1G64150			Uncharacterized protein family...		Lus10032330 [exp]	3.5	0.9413
AT1G64355			unknown protein		Lus10003895 [exp]	4.5	0.9390
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	4.9	0.9398
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	5.5	0.9443
AT1G54500			Rubredoxin-like superfamily pr...		Lus10015945 [exp]	6.6	0.9418
AT1G07700			Thioredoxin superfamily protei...		Lus10024726 [exp]	7.0	0.9398
AT1G49975			unknown protein		Lus10006137 [exp]	9.5	0.9365
AT3G45050			unknown protein		Lus10041331 [exp]	11.6	0.9397

Compare expression of checked genes

Lus10004762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.