Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38890 239 / 1e-81 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003098 [exp] 299 / 1e-105 AT5G38890 249 / 2e-85 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050400 [exp] 281 / 5e-98 AT5G38890 293 / 2e-102 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF10447 [flax] [poplar] EXOSC1 Exosome component EXOSC1/CSL4
Representative CDS sequence Show only first row Show all	>Lus10004763 pacid=23140482 polypeptide=Lus10004763 locus=Lus10004763.g ID=Lus10004763.BGIv1.0 annot-version=v1.0 ATGTATGTCTTCTCTTCTCTCAGCGGTCTCCGCCGTACTCATCCTCCTCCTCCAGACTCTCCCGACCAGAGACCAACGGTGGAGGTGATTGGACATAAAG CTCGTGGTGCTGTTCCAGAGACTGGATCTGTCGTTATTGCTCGAGTAACTAAAGTTATGGCTAAGATGGCTTCCGCTGATATTATGTGTGTTGGGCCGAA ATCTGTGCGGGAGAAGTTTACTGGCATCATAAGGCAACAAGATGTAAGAGCTACTGAGATTGATAAAGTGGATATGCACTTGTCATTTCGCCCTGGTGAC ATAGTCAAAGCCTTAGTTCTTTCCCTCGGAGATGCACGCGCATATTATCTCTCAACAGCGAAGAACGAGCTAGGAGTTGTCTCTGCTAACAGTACTGCCG GCGCAACCATGGTTCCAATCAGTTGGACAGAGATGCAATGCCCGCTGACTGGACAAATAGAGCAAAGAAAGGTAGCTAAAGTTGGAGGTTGA
AA sequence Show only first row Show all	>Lus10004763 pacid=23140482 polypeptide=Lus10004763 locus=Lus10004763.g ID=Lus10004763.BGIv1.0 annot-version=v1.0 MYVFSSLSGLRRTHPPPPDSPDQRPTVEVIGHKARGAVPETGSVVIARVTKVMAKMASADIMCVGPKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGD IVKALVLSLGDARAYYLSTAKNELGVVSANSTAGATMVPISWTEMQCPLTGQIEQRKVAKVGG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10004763 [exp]	0	1
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10033907 [exp]	1.0	0.8725
AT5G09270			unknown protein		Lus10004877 [exp]	3.0	0.8365
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10037606 [exp]	4.2	0.8662
AT1G78590		NADK3, ATNADK-3	ARABIDOPSIS THALIANA NADH KINA...		Lus10035645 [exp]	4.5	0.8177
AT4G30220		RUXF	small nuclear ribonucleoprotei...		Lus10006867 [exp]	4.6	0.8651
AT1G11240			unknown protein		Lus10018438 [exp]	6.0	0.8629
AT1G76405			unknown protein		Lus10025161 [exp]	6.3	0.8461
AT3G59650			mitochondrial ribosomal protei...		Lus10006114 [exp]	6.5	0.8466
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	12.0	0.8600
AT4G14000			Putative methyltransferase fam...		Lus10008886 [exp]	12.5	0.7759

Compare expression of checked genes

Lus10004763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.