Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18470 109 / 2e-28 Curculin-like (mannose-binding) lectin family protein (.1) AT3G16030 44 / 5e-05 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT2G19130 42 / 0.0001 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003099 [exp] 358 / 1e-124 AT5G18470 296 / 4e-97 Curculin-like (mannose-binding) lectin family protein (.1) Lus10003156 [exp] 55 / 7e-09 AT3G16030 556 / 0.0 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Lus10014808 [exp] 50 / 4e-07 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 47 / 3e-06 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 45 / 1e-05 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10020052 [exp] 41 / 0.0003 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050500 [exp] 124 / 1e-34 AT5G18470 228 / 7e-72 Curculin-like (mannose-binding) lectin family protein (.1) Potri.011G128900 [exp] 54 / 1e-08 AT4G27290 834 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 51 / 1e-07 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G441400 [exp] 51 / 2e-07 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G412100 [exp] 49 / 9e-07 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.019G119200 [exp] 48 / 1e-06 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G442200 [exp] 47 / 4e-06 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G414077 [exp] 46 / 8e-06 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G437875 [exp] 45 / 9e-06 AT5G18470 157 / 5e-44 Curculin-like (mannose-binding) lectin family protein (.1) Potri.011G037100 [exp] 45 / 9e-06 AT4G21380 982 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Lus10004765 pacid=23140486 polypeptide=Lus10004765 locus=Lus10004765.g ID=Lus10004765.BGIv1.0 annot-version=v1.0 ATGGCGACGAGCAAAATTAACTGGTCAACGGGAACGTTCATAAACGGTAGCTTCCAGAACGCTACTTCACTCACCGGATTAACGAAAGACTCAGGAATCC ACGAATTCAAATTCGTTAAGAACAATGACGAGAGGTATTTCACTTACTCGATTCGTAACAGTCCTGCTCTGTCCAGGATGGATCTGGACACTCTAGGTCA GATCACGCTCTTCACTCTGGACGGAAGAAGAGGTAGTGAGTCGTGGATCTTCGACACGGCGGGGAGCCCGTGCCCTGCCGGCGTGGGGAACGTTGGTGTT TGCTTGGCGGAGGAAGGTGGATCCGGCTGCCGGAATGGGGCGGAGGCGTTCGTCGGAAAGAGAGGGTATATGATCGGAGAAGAGAGATTTGGAGAAGGAT CGTCGTTGAGTCTGAGCGATTGCCATGGGGAGTGCTGGAGGAATTGTTCGTGCGTGGCGTATCAAGCAGCGTCGTATGATGAGACTGGGTTCAGGTTTTG GAGTCGCGGGTCGAATTTTACCGCTGATGATTTTATTGGGCTTGATGGAATTGCTGACGTGGTTTACCTTCTAAAGTGA
AA sequence Show only first row Show all	>Lus10004765 pacid=23140486 polypeptide=Lus10004765 locus=Lus10004765.g ID=Lus10004765.BGIv1.0 annot-version=v1.0 MATSKINWSTGTFINGSFQNATSLTGLTKDSGIHEFKFVKNNDERYFTYSIRNSPALSRMDLDTLGQITLFTLDGRRGSESWIFDTAGSPCPAGVGNVGV CLAEEGGSGCRNGAEAFVGKRGYMIGEERFGEGSSLSLSDCHGECWRNCSCVAYQAASYDETGFRFWSRGSNFTADDFIGLDGIADVVYLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	0	1
AT4G19390			Uncharacterised protein family...		Lus10018793 [exp]	5.0	0.8329
					Lus10025402 [exp]	5.3	0.8544
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	9.6	0.8427
					Lus10034388 [exp]	10.1	0.8732
AT2G42005			Transmembrane amino acid trans...		Lus10013835 [exp]	10.9	0.8280
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10030403 [exp]	15.9	0.8159
AT5G48290			Heavy metal transport/detoxifi...		Lus10025182 [exp]	16.1	0.8296
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10041479 [exp]	20.6	0.8253
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10013081 [exp]	26.5	0.7908
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	29.0	0.8341

Compare expression of checked genes

Lus10004765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.