Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012671 [exp] 144 / 2e-43 ND / Lus10030107 [exp] 110 / 2e-28 ND / Lus10005288 [exp] 108 / 2e-28 ND / Lus10021194 [exp] 101 / 1e-26 ND / Lus10038551 [exp] 87 / 1e-21 ND / Lus10005726 [exp] 83 / 4e-18 AT5G51200 2356 / 0.0 EMBRYO DEFECTIVE 3142, Protein of unknown function (DUF3414) (.1) Lus10038594 [exp] 77 / 2e-17 ND / Lus10033023 [exp] 74 / 2e-15 AT2G26695 202 / 4e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10006132 [exp] 67 / 2e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004769 pacid=23140496 polypeptide=Lus10004769 locus=Lus10004769.g ID=Lus10004769.BGIv1.0 annot-version=v1.0 ATGGAAACAACAAGTGTTGAGAAGTTATTAAGTGATTTTACAAGACAATTTGGGGATAGATTGATAAAGCAAGAAGATAAGATTGATCGCTTGTCAAGTA AAATGGAAATCCTCCAAGATGCTTTCTTTGAATTGGAACACAAAACTCGAGCTTGGCATGCTGACATTGGAGAAAGAATTAAAGTGGCGGGACAAATTGA AGATGTTGGTGTGATCGAGGAGGAGTCTAAAGACGAGAAGGCTTTTTTGGCTAGTCTGAGACAGGGCGACATTGAAGAAGTTTCGTTCTACTTCTCCGAT GAAGAAGGGGGAAATGCTTATATGGCTAAGTTGAGAAAGGAGGATGAGGAGCTTTGTGGAGTTCACAATGCTAGCATCACGCCCTTAGTCATAGATGCTC ATGATGCACCCGAAGAGTCTAAGATCTTAGAAGAACCAATCACTTCATATGGCGATGCTACCTCCTCTTCAAATGAATCATCAATGGAATTCTCTGAACC TACTACTAAGGCAAACAAAAGAAAGTGCCTAAGTAGAAGGAAAAGGAAGAGGCGTCGCAAAGAATTGATGATGGTTGAGCAAGCCAAGAGTAAGGAGGAT GTGCCTTTACTTAGTCCTTTGATGAAGATTGCTACCATTCCTACCGGTTGTGTTGAGTTTACTCATCCGTAA
AA sequence Show only first row Show all	>Lus10004769 pacid=23140496 polypeptide=Lus10004769 locus=Lus10004769.g ID=Lus10004769.BGIv1.0 annot-version=v1.0 METTSVEKLLSDFTRQFGDRLIKQEDKIDRLSSKMEILQDAFFELEHKTRAWHADIGERIKVAGQIEDVGVIEEESKDEKAFLASLRQGDIEEVSFYFSD EEGGNAYMAKLRKEDEELCGVHNASITPLVIDAHDAPEESKILEEPITSYGDATSSSNESSMEFSEPTTKANKRKCLSRRKRKRRRKELMMVEQAKSKED VPLLSPLMKIATIPTGCVEFTHP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004769 [exp]	0	1
					Lus10024480 [exp]	1.0	0.9270
AT1G78690			Phospholipid/glycerol acyltran...		Lus10004768 [exp]	1.7	0.8966
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	2.0	0.9234
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10000709 [exp]	4.9	0.8027
AT5G44960			F-box/RNI-like/FBD-like domain...		Lus10015246 [exp]	6.0	0.8623
					Lus10022938 [exp]	6.7	0.8310
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	6.9	0.8188
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	9.2	0.7470
					Lus10028109 [exp]	11.2	0.7983
					Lus10013650 [exp]	11.5	0.8107

Compare expression of checked genes

Lus10004769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.