Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 181 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G18430 171 / 2e-53 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 163 / 5e-50 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G33370 157 / 5e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G50400 104 / 2e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 98 / 5e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 100 / 8e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 99 / 1e-25 SGNH hydrolase-type esterase superfamily protein (.1) AT1G06990 96 / 1e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 94 / 1e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003106 [exp] 245 / 5e-82 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10003107 [exp] 182 / 9e-60 AT3G04290 213 / 6e-69 Li-tolerant lipase 1 (.1) Lus10004774 [exp] 182 / 4e-59 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004771 [exp] 177 / 3e-58 AT3G04290 213 / 5e-69 Li-tolerant lipase 1 (.1) Lus10011279 [exp] 143 / 2e-40 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10003108 [exp] 133 / 5e-39 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015950 [exp] 127 / 4e-37 AT3G04290 135 / 1e-41 Li-tolerant lipase 1 (.1) Lus10003579 [exp] 111 / 1e-29 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10018641 [exp] 102 / 1e-26 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024400 [exp] 193 / 9e-62 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.013G051000 [exp] 187 / 2e-59 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.002G253400 [exp] 185 / 1e-58 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024700 [exp] 174 / 2e-54 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 174 / 3e-54 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 174 / 3e-54 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 174 / 3e-54 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 100 / 8e-26 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 97 / 1e-24 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G153000 [exp] 95 / 4e-24 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10004770 pacid=23140495 polypeptide=Lus10004770 locus=Lus10004770.g ID=Lus10004770.BGIv1.0 annot-version=v1.0 ATGGCAAGCTCTCAGTGGTTGGCCATGGCGGTAGTTTTGGTAATCATGGGAGCGTCAGCTCCTCAGGTGAGTGATGCAGCCAGAGCTTTCTTTGTGTTTG GGGATTCGTTGGTCGACAATGGCAACAATAACTACCTTGCCACCACTGCACGCGCCGACGCGCCGCCGTATGGGGTTGACTACCCCACCCACCGCGCCAC CGGCCGCTTCTCTAACGGCTTCAACATCCCTGACCTCCTTAGTCAAGCAATTGGTGCATCGGAGCCAACATTGCCATATCTAAACCCAGCGCTGAACGGG CAACGCCTCCTCGTCGGCGCCAACTTCGCCTCCGCCGGAATCGGCATTCTCAACGACACCGGCATCCAATTCATTCATGTAGCTTTAGCTTGTCATGGTT AG
AA sequence Show only first row Show all	>Lus10004770 pacid=23140495 polypeptide=Lus10004770 locus=Lus10004770.g ID=Lus10004770.BGIv1.0 annot-version=v1.0 MASSQWLAMAVVLVIMGASAPQVSDAARAFFVFGDSLVDNGNNNYLATTARADAPPYGVDYPTHRATGRFSNGFNIPDLLSQAIGASEPTLPYLNPALNG QRLLVGANFASAGIGILNDTGIQFIHVALACHG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	1.0	0.9478
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	3.2	0.9304
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10028814 [exp]	3.5	0.9251
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	3.9	0.9259
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	3.9	0.8939
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Lus10015924 [exp]	7.6	0.8369
AT1G27460		NPGR1	no pollen germination related ...		Lus10018679 [exp]	7.7	0.8534
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	8.0	0.8757
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	8.7	0.8546
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10027175 [exp]	9.5	0.8584

Compare expression of checked genes

Lus10004770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.