Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 195 / 5e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 193 / 4e-61 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G18430 180 / 2e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 177 / 2e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G50400 116 / 1e-31 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 107 / 3e-28 SGNH hydrolase-type esterase superfamily protein (.1) AT2G23540 107 / 5e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 102 / 2e-27 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 102 / 3e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 98 / 1e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003107 [exp] 298 / 4e-105 AT3G04290 213 / 6e-69 Li-tolerant lipase 1 (.1) Lus10004774 [exp] 193 / 8e-63 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003106 [exp] 192 / 8e-61 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10004770 [exp] 176 / 1e-57 AT4G28780 181 / 3e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003108 [exp] 157 / 6e-48 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 165 / 1e-47 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10003579 [exp] 138 / 9e-39 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10015950 [exp] 131 / 7e-38 AT3G04290 135 / 1e-41 Li-tolerant lipase 1 (.1) Lus10005238 [exp] 111 / 2e-29 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024600 [exp] 208 / 5e-67 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 207 / 8e-67 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.002G253400 [exp] 203 / 4e-65 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051000 [exp] 199 / 1e-63 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024700 [exp] 198 / 4e-63 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 194 / 2e-61 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 188 / 3e-59 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G153000 [exp] 106 / 6e-28 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.017G130100 [exp] 105 / 1e-27 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 101 / 5e-26 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10004771 pacid=23140489 polypeptide=Lus10004771 locus=Lus10004771.g ID=Lus10004771.BGIv1.0 annot-version=v1.0 ATGGCGACTATGATCCTAACCCTAGTCATGGCCGTAGCCATGATTGGGAGTAGTACCTTGGGGGCCGTCAATGCGGCTCCGAGGGCATTTTTCGTGTTCG GGGATTCGCTAGTCGACAATGGGAACAACAACTACTTAGCCACCACTGCTCGTGCTGACTCGCCGCCTTATGGGGTCGACTACCCGACTGGGCGCCCAAC TGGCCGCTTTTCCAATGGCTATAACATCCCTGACTTCATCAGTCAAGCTCTTGGAGCAGAGTCCACATTGCCATACTTGAGTCCAGAGCTTACAGGGGAC AGGTTGCTTGTGGGTGCCAATTTTGCTTCTGCTGGGATTGGGGTCTTGAATGACACTGGAATTCAGTTTATAAACATAATAAGGATGTTCCAACAGTACC AGTACTTCGAGCAGTACCAGCAACGACTGGCCGCACTCATCGGGCCAGAACAGGCTCAGCAGCATATCAGATGGGTCAAATTAGGATTAGACTGA
AA sequence Show only first row Show all	>Lus10004771 pacid=23140489 polypeptide=Lus10004771 locus=Lus10004771.g ID=Lus10004771.BGIv1.0 annot-version=v1.0 MATMILTLVMAVAMIGSSTLGAVNAAPRAFFVFGDSLVDNGNNNYLATTARADSPPYGVDYPTGRPTGRFSNGYNIPDFISQALGAESTLPYLSPELTGD RLLVGANFASAGIGVLNDTGIQFINIIRMFQQYQYFEQYQQRLAALIGPEQAQQHIRWVKLGLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	1.0	0.9980
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	1.4	0.9855
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	2.2	0.9538
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	2.4	0.9827
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	3.5	0.9491
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	7.5	0.9552
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	9.4	0.9270
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	10.9	0.9459
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	11.7	0.9190
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	12.0	0.9454

Compare expression of checked genes

Lus10004771 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.