Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25210 80 / 2e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 78 / 7e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 75 / 7e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G61730 74 / 2e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00250 71 / 2e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 71 / 3e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 69 / 4e-13 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 66 / 6e-12 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT3G04930 65 / 2e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2) AT5G28040 64 / 5e-11 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005506 [exp] 374 / 8e-129 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 330 / 5e-113 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10017793 [exp] 170 / 9e-51 AT1G66420 72 / 6e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 166 / 8e-48 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 159 / 3e-46 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 93 / 4e-21 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 75 / 1e-14 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 75 / 2e-14 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 74 / 3e-14 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293900 [exp] 160 / 2e-45 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 157 / 4e-44 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.007G119800 [exp] 79 / 1e-15 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 74 / 3e-14 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 67 / 4e-12 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.004G090900 [exp] 57 / 9e-09 AT5G28040 60 / 7e-10 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.005G075000 [exp] 50 / 1e-06 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04504 [flax] [poplar] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Lus10004772 pacid=23140498 polypeptide=Lus10004772 locus=Lus10004772.g ID=Lus10004772.BGIv1.0 annot-version=v1.0 ATGGCTCCTAAGCGCAATCTTCCAAAAGAAGACCCTCCCGCTCCTTCTACTGTCGAGGAAGAGGAAGAGGAGGAAGAAGAGGAAGAGGAAGAAGACTCCT CTACTGAAAGCGAGGAGGAAGAAGACTCCTCTCCAGAAGAGAAGCCATCTGCTCCGCGATCCCAAGCTCAGCTAAAAAATCCAGCGATTCAGGAGCAGGA TGATGATTCTGAATCTGAGGAGAATTCCGATGACCCCGACACTGATTCAGACTCGGATCCTCCGCCGCCTGCCAAAACCGTCGCGAATGTGAAGCCGATC GCTTCAAAGCCCATGGAGTCCAAGTCTTCTACTAAGGCCCCGGCTTCGAGCGCTGCTGCTTCGAAGGCTAGGAAGAGGGCAACCCATACTGAGACGGAGG GGAAAGACACGAAGCGGCGGAAGGAGGAGTCGTCTTCGGCAGTGGTGGCGGCGAAATCTGAAGATTCCGCCAAGAAGCAGCTGTTTCATCGCATCTGGGG CGAGGACGATGAGGTTGCGCTGTTAAACGGGCTTCTGGAGTTCTCGAAGAGAGGAGTGGATCCTTTCAAGGAGATAGCTGATGTGTACGATGTCGTGAAG AAATCACTCAACATTGACATCTCTGTGTCTCAGCTGAAGGAGAAAGCTTTTCGGTTGAAGAAGAAGTTTATGAAGAATGCCAACGGGAAAGATGGTGAAG GCAAGAGCTTCACCAAACAACATGACCAGAAGTGTTCCGATTTGTCCAAGAAAATCTGGGGCTCGGAAGCATCCAGCCGAGCTGTAGAAGCCATCAATAA TGCTCCTCCCAAGCCAAATAAAAAGGAAAAGGGCAACAGCAGCAATGGAATTACTCCTAAGCGACATTCGGGTATAGAGAATGGCGGTGCAGTTCAGAAG AAGGAAACCAAAGGAAACGGAAAGACAGAGGAGTCGTCAAGCTGCAAGTTGGTTATGTTGCCTGGGGAAGATATAAGGGATATTGTGATTAAGAAGGGAT TGGACATGATGGAAGGATCAAAGCGGGGCGAGTTTGAGGAAAGATGGAAGGATGTGCATGTGGCAACTTTGAAGCTCTTTGTACAACGGGAGCAGTTGGT GGTTGATCAGGCTAAGTTGATGCTGGCTGCCATGGATGAGGATTAG
AA sequence Show only first row Show all	>Lus10004772 pacid=23140498 polypeptide=Lus10004772 locus=Lus10004772.g ID=Lus10004772.BGIv1.0 annot-version=v1.0 MAPKRNLPKEDPPAPSTVEEEEEEEEEEEEEDSSTESEEEEDSSPEEKPSAPRSQAQLKNPAIQEQDDDSESEENSDDPDTDSDSDPPPPAKTVANVKPI ASKPMESKSSTKAPASSAAASKARKRATHTETEGKDTKRRKEESSSAVVAAKSEDSAKKQLFHRIWGEDDEVALLNGLLEFSKRGVDPFKEIADVYDVVK KSLNIDISVSQLKEKAFRLKKKFMKNANGKDGEGKSFTKQHDQKCSDLSKKIWGSEASSRAVEAINNAPPKPNKKEKGNSSNGITPKRHSGIENGGAVQK KETKGNGKTEESSSCKLVMLPGEDIRDIVIKKGLDMMEGSKRGEFEERWKDVHVATLKLFVQREQLVVDQAKLMLAAMDED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	0	1
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	2.6	0.8439
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	4.0	0.8281
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	5.7	0.8244
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10026118 [exp]	6.0	0.7666
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	6.7	0.8266
AT2G25720			unknown protein		Lus10032479 [exp]	7.2	0.7867
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	7.4	0.8182
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	7.5	0.8064
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	7.7	0.7766
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	8.8	0.8176

Compare expression of checked genes

Lus10004772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.