Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18430 281 / 9e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 265 / 9e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G04290 259 / 9e-86 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT4G28780 250 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 142 / 3e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G16370 134 / 3e-37 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 129 / 1e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G04570 126 / 1e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 125 / 2e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 125 / 3e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003108 [exp] 385 / 4e-136 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003106 [exp] 248 / 2e-81 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10011279 [exp] 218 / 7e-65 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10003107 [exp] 171 / 6e-54 AT3G04290 213 / 6e-69 Li-tolerant lipase 1 (.1) Lus10004771 [exp] 170 / 1e-53 AT3G04290 213 / 5e-69 Li-tolerant lipase 1 (.1) Lus10004770 [exp] 157 / 4e-49 AT4G28780 181 / 3e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003579 [exp] 156 / 2e-44 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10022471 [exp] 134 / 4e-37 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 133 / 6e-37 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024700 [exp] 307 / 1e-104 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 296 / 4e-100 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 290 / 6e-98 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 288 / 2e-97 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051000 [exp] 263 / 2e-87 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.002G253400 [exp] 261 / 2e-86 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024400 [exp] 255 / 2e-84 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.017G130100 [exp] 137 / 1e-38 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G205100 [exp] 135 / 1e-37 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 127 / 9e-35 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10004774 pacid=23140477 polypeptide=Lus10004774 locus=Lus10004774.g ID=Lus10004774.BGIv1.0 annot-version=v1.0 ATGGCAATAGTAGTAATCCTCCTCCTCATCATGTCCATGGGACTCCATAACAATGCCGAAGCAAGAGCATTCTTCGTGTTCGGAGATTCCCTCGTCGACA GTGGCAACAACAACTACCTCGCCACCACTGCTCGCGCCGATTCCCCTCCTTATGGCATCGACTACCCTACTCGTCGCCCCACCGGCCGGTTCTCCAACGG CCTCAACATTCCCGACCTTATAAGTGAGAGAATTGGACAGTCAGAGCCACCTCTGCCTTACTTGTCTCCCGAGCTGACTGGGCAGAGGCTGCTGAATGGT GCCAACTTTGCTTCTGCTGGAATTGGAATCCTCAACGATACTGGAGTCCAATTTATCAACATCATAAGAATGTACCAGCAACTGGAGAACTTCCAACAAT ACCAGCGCCGGCTTCGAGCCCTAATCGGAGCAAATCGAGCCAAAAGGCTCGTAAAGGGAGCAATATGCTTGATAACAGTAGGTGGGAATGATTTTGTAAA CAACTATTACCTGGTGCCTTACTCTGCTAGGTCTACCCAAATGCCTCTCCCAGATTATGTCAAATATGTCATCTCTGAGTACAAAAAGTTACTAAAGATG CTGACTGGACTGAATAGAGAGATTGGGAGGGATGTGTTCATTGGTGTAAATACTGGACGGATGCATATGGAGTTTGTTACCAACCCTGGAGATTATGGTA ATTAA
AA sequence Show only first row Show all	>Lus10004774 pacid=23140477 polypeptide=Lus10004774 locus=Lus10004774.g ID=Lus10004774.BGIv1.0 annot-version=v1.0 MAIVVILLLIMSMGLHNNAEARAFFVFGDSLVDSGNNNYLATTARADSPPYGIDYPTRRPTGRFSNGLNIPDLISERIGQSEPPLPYLSPELTGQRLLNG ANFASAGIGILNDTGVQFINIIRMYQQLENFQQYQRRLRALIGANRAKRLVKGAICLITVGGNDFVNNYYLVPYSARSTQMPLPDYVKYVISEYKKLLKM LTGLNREIGRDVFIGVNTGRMHMEFVTNPGDYGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	2.0	0.8834
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10024834 [exp]	2.4	0.9126
AT1G71680			Transmembrane amino acid trans...		Lus10008263 [exp]	3.5	0.9145
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	4.2	0.8614
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009624 [exp]	4.6	0.8843
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	8.1	0.8461
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	8.1	0.8387
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	9.9	0.8676
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	10.0	0.8823
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10010148 [exp]	11.0	0.8089

Compare expression of checked genes

Lus10004774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.