Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18410 2100 / 0 ATSRA1, KLK, PIRP, SRA1, PIR121 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3) AT5G18404 83 / 4e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003109 [exp] 360 / 7e-115 AT5G18410 284 / 1e-87 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025200 [exp] 2221 / 0 AT5G18410 2230 / 0.0 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3) Potri.013G051200 [exp] 2206 / 0 AT5G18410 2241 / 0.0 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05994 [flax] [poplar] FragX_IP Cytoplasmic Fragile-X interacting family
Representative CDS sequence Show only first row Show all	>Lus10004776 pacid=23140493 polypeptide=Lus10004776 locus=Lus10004776.g ID=Lus10004776.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCAGTAGAGGAAGCCATTGCAGCTCTCTCCACATTCTCACTAGAGGATGAGCAGCCAGATGTACAAGGACCGGCGGTTTTAGTTTCCAGTG AACGGGGAGCAACAAATAGTCCTACTGAGTACAGTGATGTTGCTGCTTATCGGTTATCATTATCAGAGGACACAAAAGCTCTCAATCAGCTGAATGCTCT TGTCCAAGAGGGTAAAGAAATGGCATCTGTCCTTTATACATATCGTAGCTGTGTTAAAGCCCTTCCTCAGCTTCCTGAATCCATGAAACATAGTCAGGCT GATTTATATTTGGAGACATATCAAGTTTTGGACTTGGAAATGAGCCGTCTTCGTGAAATTCAGCGATGGCAGTCATCAGCTGCAGCTAAACTGGCAGCAG ATATGCAACGTTTTTCTCGCCCTGAACGGCGAATTAATGGCCCCTCAATAACTCATCTCTGGTCTATGCTGAAGTTACTTGATGTTTTGTTGCAACTTGA TCACCTTAAAAATGCTAAAGCAAGTATACCTAATGACTTTACTTGGTATAAAAGGACTTTCACTCAAGTCAGTGTTCAGTGGCAAGAGATTGATTCAATG AGGGAGGAATTAGATGATCTACAGAAAAGTGTGGAAGACATTCTTCAAGTTCTTATAGTCTTCGCTGTTGAGTCATTGGAGTTGGATTTTGCACTTCTAT TTCCAGAAAGGCATACTCTTCTACGTGTTTTGCCTGTTCTCGTTGTCTTAGCGACATCATCAGAGAAAGACAGCGAGTCTCTGTACAAGAGGGTGAAGGT CAACAGGGTTATTAATATTTTTAAGAATGATCCTGTGATCCCTGCATTTCCTGATCTTCATCTCTCTCCTGCTGCAATTGTGAAAGAACTGTCCAGTTAC TTCCATAAGTCGCCTGCACAAACTCGTCTTCTTATCCTTGCAGCTCCGCATGAGCTTCCGGCACAAGAATTGTGTGGAGACCTTGTAAATTCTTTGCAGG AGAGACAGTATCTCCTTGCAAATCACATTGGGGGCATCCGTGCTGAGCATGATGACTTCTCTATTCGGTTTGCTTCATCCTTAAATCAATTACTGTTGTT AAAGTCGACTGATGGAGTAGATGTTGAGTGGAGCAAGGAAGTTAAGGGAAATGTATACGATATGGTTGTGGAAGGTTTCCAGCTCTTAAGCAAATGGACT GGTCGTATCTGGGAACAATGTGCCTGGAAGTTCTCTCGTCCATGCAAAGATGCAGTTCCTTCAGAACCAAATGGAGTTCTGACATCAGTTTCTGACTATG AAAAGGTTGTGCGATATAATTACACTGCTGAGGAAAGGAAGGCACTGATCGAACTTGTTAGCTACATCAAGAGTGTTGGGTCTATGATGCATCGATGTGA TACACTGGTGTCTGATGCCTTGTGGGAAACAATACATGCGGAGGTGCAAGACTTTGTCCAGAACATATTAGCCACTATGTTGAAAACTACTTTCAGGAAA AAGAAGGACCTTTCAAGGATTCTTTCTGATATGCGGACACTTTCAGCAGACTGGATGGCAAATACAAGTAAGGGAGAAGGTGACATGCAGCCACAAGGGG CTGAAGAGAGCAAAGGGGTTTTCTTTTATCCCAGGCCGGTTGCCCCAACAGTTGCACAGGTCCATTGCTTGCAGTTCCTCATTTATGAAGCAGTCTCTGG GGGTAATCTCCGGAAACCAGGGGGGCTCTTTGGTAACAGTGGATCTGAGATCCCTGTGAATGATTTGAAGCAGTTAGAGTCATTCTTCTACAAGCTTAGT TTCTTTTTGCATATATTAGACTATTCTGCTACAATTGCAACCTTAACAGACCTTGGTTTCTTGTGGTTTAGAGAATTTTATTTGGAGTCATCACGTGTTA TTCAGTTCCCCATAGAATGCTCTCTTCCCTGGATGCTGGTGGATCATGTACTTGAATTCCATAACACAGGACTTCTTGAAAGTGTTCTTATGCCATTTGA CATTTACAATGATTCTGCTCAACAAGCTTTGGTTATTCTGAGGCAACGTTTTCTGTATGATGAAATTGAGGCTGAGGTGGACAATTGCTTTGATTTATTT GTTTCTAGACTATGTGAAATTATCTTCACTTATTACAAAAGCTGGGCTGCAAGTGAACTTCTTGATCCATCGTTTCTCTTTGCCTTGGACAATGGAGAAA AATATTCCACCCAGCCCATGAGGTTTACTGCACTATTTAAGACCACCAGAGTAAAGTTACTTGGGAGGTCCATTAATTTGAGAAGGCTTATTGCTGAAAG GATGAACAAAGTTTTCAGAGAGAATCTGGAGTTCTTGTTTGATCGTTTTGAGTCGCAGGATCTATGTGCCGTAGTGGAGCTAGAGAAACTTTTAAATGTC TTGAAGCATGCCCATGAACTTCTTACGAAGGATATTTCAATAGACTCTTTTGACCTGATGCTGAATGAGATGCAAGAAAATGTATCTCTTGTGTCATTTT CCAGTCGACTGGCTTCTCAGATTTGGTCAGAGATGCAAAGTGATTTCTTTCCAAACTTTGTCCTTTGCAATACTACTCAACGTTTTGTCCGATCATCAAG AATTCCTCACCTTTCTGTTCAAAAGCCATCTCTTCCCCATGCAAAGCCTAACTTCTACTGTGGCACCCCGGAACTGAATGCTGCACATCAAAGTTTTGCA CGCTTGCACAGTGGATTCTTTGGGATCCCTCACCTCTTTTCCATTGTCAGACTCCTTGGATCCAGATCTTTGCCTTGGCTTATCCGAGCTCTTCTAGATC ATATATCGAATAAGTTAACTGCACTTGAGCCAATGATTATGGGATTGCAAGAAGCATTGCCAAAATCCATCGGGTTGCTTCCCTTTGATAGTGGCGTGAC AGGTTGTATGAGGCTTGTTAAAGAAAGTCTTACGTGGGGTACGAAATCAGAGCTCAAAGCTGAAGTTCTTAGAGGTATTAAAGAGATTGGAAGCGTTCTT TATTTGATGGGGCTTCTTGACATCGTGTTGAGGGAAGTTGATTGCATGCATTTCATGCAAACAGCTCCTTGGTTGGGGTTAGTTCCTGGTTCAGATGGAC AAATATTACATTCTCAAGATGGGGGTGACAGTCCTATTGTTCGCCTCTTCAAAGCAGCTACTGCTGCAATTGTATCCAACCCTGGGTGTCCGAATCCCAC ACCGTTCTATACCATGTCGAAACAGGCAGAGGCTGCAGATCTTCTGTACAAGGCCAACATAAACAGTGGAAGTGTGCTGGAGTATGCCCTTGCATTTACT AGTGCAGCCCTTGATAAATTTTGCACAAAGTGGAGTACAGCTCCAAAGACTGGGTTCATCGACATAACAACTTCCAAGGATTTCTACCGAATATATAGCG GCCTTCAAATCGGATATCTAGAGGATTCTGCTCAATCGTCATCCGGTAACCACGATATACTTGGTGATTCCATAGCTTGGGGTGGTTGCACCATCATTTA CTTGCTTGGACAACAGCTGCAATTCGAGCTGTTCGATTTCTGCTATCAAGTACTAAATGTTGCAGAGGTTGAAGCTGGGTCACTGTCCCTAACACATAGG AATCCTCATATACTCCAGGGATGGGATACTCTACTAGAGGCGATGAAGAAAGCGAGGAGGTTGAACAACCACGTGTTCTCGATGCTAAAAGCGCGCTGCC CTCTCGAGGACAAGACAGCATGCGCCATCAAGCAAAGCGGAGCGCCTCTGCATCGCGTCAAGTTTGAGAATACGGTCTCTGCGTTCGAGACATTGCCTCA GAAAGGTGTCTGA
AA sequence Show only first row Show all	>Lus10004776 pacid=23140493 polypeptide=Lus10004776 locus=Lus10004776.g ID=Lus10004776.BGIv1.0 annot-version=v1.0 MAVPVEEAIAALSTFSLEDEQPDVQGPAVLVSSERGATNSPTEYSDVAAYRLSLSEDTKALNQLNALVQEGKEMASVLYTYRSCVKALPQLPESMKHSQA DLYLETYQVLDLEMSRLREIQRWQSSAAAKLAADMQRFSRPERRINGPSITHLWSMLKLLDVLLQLDHLKNAKASIPNDFTWYKRTFTQVSVQWQEIDSM REELDDLQKSVEDILQVLIVFAVESLELDFALLFPERHTLLRVLPVLVVLATSSEKDSESLYKRVKVNRVINIFKNDPVIPAFPDLHLSPAAIVKELSSY FHKSPAQTRLLILAAPHELPAQELCGDLVNSLQERQYLLANHIGGIRAEHDDFSIRFASSLNQLLLLKSTDGVDVEWSKEVKGNVYDMVVEGFQLLSKWT GRIWEQCAWKFSRPCKDAVPSEPNGVLTSVSDYEKVVRYNYTAEERKALIELVSYIKSVGSMMHRCDTLVSDALWETIHAEVQDFVQNILATMLKTTFRK KKDLSRILSDMRTLSADWMANTSKGEGDMQPQGAEESKGVFFYPRPVAPTVAQVHCLQFLIYEAVSGGNLRKPGGLFGNSGSEIPVNDLKQLESFFYKLS FFLHILDYSATIATLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVDHVLEFHNTGLLESVLMPFDIYNDSAQQALVILRQRFLYDEIEAEVDNCFDLF VSRLCEIIFTYYKSWAASELLDPSFLFALDNGEKYSTQPMRFTALFKTTRVKLLGRSINLRRLIAERMNKVFRENLEFLFDRFESQDLCAVVELEKLLNV LKHAHELLTKDISIDSFDLMLNEMQENVSLVSFSSRLASQIWSEMQSDFFPNFVLCNTTQRFVRSSRIPHLSVQKPSLPHAKPNFYCGTPELNAAHQSFA RLHSGFFGIPHLFSIVRLLGSRSLPWLIRALLDHISNKLTALEPMIMGLQEALPKSIGLLPFDSGVTGCMRLVKESLTWGTKSELKAEVLRGIKEIGSVL YLMGLLDIVLREVDCMHFMQTAPWLGLVPGSDGQILHSQDGGDSPIVRLFKAATAAIVSNPGCPNPTPFYTMSKQAEAADLLYKANINSGSVLEYALAFT SAALDKFCTKWSTAPKTGFIDITTSKDFYRIYSGLQIGYLEDSAQSSSGNHDILGDSIAWGGCTIIYLLGQQLQFELFDFCYQVLNVAEVEAGSLSLTHR NPHILQGWDTLLEAMKKARRLNNHVFSMLKARCPLEDKTACAIKQSGAPLHRVKFENTVSAFETLPQKGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10004776 [exp]	0	1
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	2.6	0.8885
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	6.2	0.8793
AT3G01810			unknown protein		Lus10037001 [exp]	6.9	0.8641
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	6.9	0.8720
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	9.7	0.8848
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034471 [exp]	13.3	0.8092
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	17.9	0.8661
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	20.1	0.8644
AT1G69420			DHHC-type zinc finger family p...		Lus10037133 [exp]	20.5	0.8347
AT5G12370		SEC10	exocyst complex component sec1...		Lus10036398 [exp]	20.8	0.8652

Compare expression of checked genes

Lus10004776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.