Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13070 830 / 0 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 828 / 0 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT2G14520 77 / 8e-15 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 72 / 3e-13 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 61 / 1e-09 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 57 / 4e-08 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT1G47330 52 / 9e-07 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 51 / 2e-06 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003111 [exp] 1266 / 0 AT1G55930 866 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Lus10005259 [exp] 71 / 8e-13 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 64 / 1e-10 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 62 / 7e-10 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 62 / 1e-09 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 60 / 1e-09 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10020494 [exp] 61 / 2e-09 AT2G14520 538 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10004429 [exp] 59 / 8e-09 AT4G14230 654 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 58 / 2e-08 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G362100 [exp] 971 / 0 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Potri.009G082300 [exp] 69 / 4e-12 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 69 / 5e-12 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 66 / 5e-11 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 62 / 6e-10 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.010G030200 [exp] 62 / 7e-10 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.008G202100 [exp] 61 / 2e-09 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.014G196900 [exp] 53 / 5e-07 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF03471 [flax] [poplar] CorC_HlyC Transporter associated domain PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004777 pacid=23140500 polypeptide=Lus10004777 locus=Lus10004777.g ID=Lus10004777.BGIv1.0 annot-version=v1.0 ATGGAGATTGCGTTCGAGTCCTCATTTCTGGGTCGACCCGTGTCCGTTTCAGGATCCAAGTTCTCGTCTTTGCTGCGATACAGTCAGGTATCAAAGCTAC CATGCAAGGTCTCTAGTAAGAATTATCGCCTTTCTTCAAAATTTGTGAATCCATGCTGTTGTGGAGCTGCTGCGCTGAATAATTGGAATGTTCAGAGAAC CCGTGTGTTTGGAAGTATAATTGCTAGTTCGAGTTTGCTAGGGAATCATGCTACTGGAGATTCGGTTAGCGGATGTAATGTGACTTCGGATGTGAACTCG GAACTGATCATCGTGCTGTTGAAAAGGGGTGTTGTTCTGGGAGCAATGGTATGTGGGATACTGATGTTTGGATACCAACGGGTGCTTGCTGCGGAAGGAG TTTCAAATCCGGGCTATGGAGTTAGTGGGCAAAACATTCTGCTGCTCAAGAACTCTTGGCCAAGGCTGCAGCAGCTCCTCACCGTTTTCAAAGAGCAGGG TTTGATATTAGCTGCGCTTTTGGGCTTATCTGCATTTTTCTCCATGGCTGAGACTTCTATAACCACGCTGTGGCCGTGGAAGGTTCGTGAACTTGCAGAG AAAGATTCTGAGGATGGTGTCTTCAAGCTACTTCGCAAGGATGTCACTCGTTTTCTGACCACTATTCTCATTGGCACAACGGTTGTCAATATTGCGGCCA CTGCATTGGTCACTGAAGCAGCCACAACAATATTTGGTGAAGCTGGTGTCAGTGCGGCCACAGGAGTGATGACTGTTGCTATATTGCTCCTCACTGAGAT TACTCCTAAAAGTATAGCCGTTCACAATGCCACAGAAGTTGCTAAGTTTGTGGTCAGGCCAGTGGCTTGGCTTTCACTGGTTCTCTATCCCGTAGGCAGA GTTGTCACTTACCTATCAATGGGAATGCTGAAAATTCTTGGTCTAAAAGGAATAAGTGAACCATACGTCACCGAGGATGAGTTAAAGTTGATGTTGCGAG GGGCAGAGCTAAGTGGAGCAATAGAAGAGGAAGAGCAGGATATGATTGAGAATGTGTTGGAGATTAAGGATACACATGTAAGAGAGGTGATGACACCTCT TGTTGATGTTTTTGCAATTGATGTGGGTGCAACACTCATTGATTTTCATGAACTGTGGGTGACACATCAATATTCAAGGGTACCTGTTTTTGAGCAGCGT GTGGACAATATTGTGGGTATTGCCTATGCAATGGATCTGCTGGATTATGTACAGAAGGGTGAGCTACTAGAAAGCACAATTGTGGGAGATATGGCTCACA AACCTGCATATTTTGTGCCTGATTCAATGTCAGTCTGGAATCTTCTCAGAGAATTCCGGATAAGGAAGGTTCACATGGCTGTTGTTCTTAACGAATATGG CGGTACCGTTGGATTGGTAACTCTAGAAGATGTTGTTGAAGAGATTGTTGGTGAAATCTTTGATGAAAATGATTCAAAGGAGGAGATACAAAAGAAAACT GGGTACATAGTAAGGCGAGCAGAAGGAGTGTATGATGTTGATGCCAATATATCTACAGATCAACTCTCTGAAGATTTAAACATAAAAATGCCGGAGGGTC ATCAGTATGAGACAGTATCAGGATTTATATGCGAGGCATTTGGATACATTCCAAGGACAGGCGAGAGTATCAAGGTAGTTCTCGAAAAGGAAACTGAAGA AGATGAGGATGCTCAAGGCATTTCTAATCGAGAACAGCATGAGAAGCATATGATATACAAGCTTGAGGTATTGGCTGGAAATGCCAGAAAGGTGAGTGCA GTCCGGTTCGAACGGATACAAAACGGTGACGAGGCAGTGGCTGCCAAAGAGGTAACTCGCTTGCTTCCCAAGTTCCGGAAGAGAAAATGGAGGAGTGATA AAGAGTCGGATGGTGATGACCATTACGAGGACGATTCATTCCAAGAGAGACCAGTGTATGCTCTCTCTGATTCCAACGTAATTGCTGAAGATGATGATGA GGATCCCAGTAGAAACTAA
AA sequence Show only first row Show all	>Lus10004777 pacid=23140500 polypeptide=Lus10004777 locus=Lus10004777.g ID=Lus10004777.BGIv1.0 annot-version=v1.0 MEIAFESSFLGRPVSVSGSKFSSLLRYSQVSKLPCKVSSKNYRLSSKFVNPCCCGAAALNNWNVQRTRVFGSIIASSSLLGNHATGDSVSGCNVTSDVNS ELIIVLLKRGVVLGAMVCGILMFGYQRVLAAEGVSNPGYGVSGQNILLLKNSWPRLQQLLTVFKEQGLILAALLGLSAFFSMAETSITTLWPWKVRELAE KDSEDGVFKLLRKDVTRFLTTILIGTTVVNIAATALVTEAATTIFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVAKFVVRPVAWLSLVLYPVGR VVTYLSMGMLKILGLKGISEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVFAIDVGATLIDFHELWVTHQYSRVPVFEQR VDNIVGIAYAMDLLDYVQKGELLESTIVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKT GYIVRRAEGVYDVDANISTDQLSEDLNIKMPEGHQYETVSGFICEAFGYIPRTGESIKVVLEKETEEDEDAQGISNREQHEKHMIYKLEVLAGNARKVSA VRFERIQNGDEAVAAKEVTRLLPKFRKRKWRSDKESDGDDHYEDDSFQERPVYALSDSNVIAEDDDEDPSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	0	1
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	1.7	0.9339
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	2.4	0.9267
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	3.9	0.8962
AT2G17510		EMB2763	EMBRYO DEFECTIVE 2763, ribonuc...		Lus10029500 [exp]	7.1	0.9199
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	9.5	0.9235
AT1G31660			unknown protein		Lus10032891 [exp]	11.7	0.9140
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Lus10003518 [exp]	12.2	0.8533
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	13.4	0.8752
AT2G25970			KH domain-containing protein (...		Lus10004445 [exp]	13.6	0.8450
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	14.3	0.9200

Compare expression of checked genes

Lus10004777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.