Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50260 227 / 9e-73 CEP1 cysteine endopeptidase 1, Cysteine proteinases superfamily protein (.1) AT3G48340 224 / 2e-71 CEP2 cysteine endopeptidase 2, Cysteine proteinases superfamily protein (.1) AT5G45890 221 / 1e-70 SAG12 senescence-associated gene 12 (.1) AT5G43060 215 / 6e-67 Granulin repeat cysteine protease family protein (.1) AT3G48350 210 / 4e-66 CEP3 cysteine endopeptidase 3, Cysteine proteinases superfamily protein (.1) AT3G19390 211 / 2e-65 Granulin repeat cysteine protease family protein (.1) AT4G36880 200 / 4e-62 CP1 cysteine proteinase1 (.1) AT1G47128 199 / 6e-61 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1) AT1G20850 195 / 2e-60 XCP2 xylem cysteine peptidase 2 (.1) AT1G06260 194 / 3e-60 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003275 [exp] 329 / 7e-113 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10006542 [exp] 328 / 1e-112 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10042295 [exp] 325 / 2e-111 AT5G45890 402 / 7e-141 senescence-associated gene 12 (.1) Lus10028501 [exp] 324 / 6e-111 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1) Lus10020723 [exp] 324 / 6e-111 AT5G45890 398 / 3e-139 senescence-associated gene 12 (.1) Lus10028502 [exp] 323 / 1e-110 AT5G45890 394 / 3e-137 senescence-associated gene 12 (.1) Lus10029799 [exp] 323 / 1e-110 AT5G45890 393 / 3e-137 senescence-associated gene 12 (.1) Lus10020722 [exp] 323 / 2e-110 AT5G45890 392 / 1e-136 senescence-associated gene 12 (.1) Lus10032406 [exp] 321 / 5e-110 AT5G45890 391 / 2e-136 senescence-associated gene 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G075100 [exp] 327 / 6e-113 AT5G45890 371 / 4e-129 senescence-associated gene 12 (.1) Potri.004G056100 [exp] 281 / 4e-94 AT5G45890 419 / 2e-147 senescence-associated gene 12 (.1) Potri.004G056316 [exp] 280 / 6e-94 AT5G45890 419 / 3e-147 senescence-associated gene 12 (.1) Potri.004G056258 [exp] 279 / 2e-93 AT5G45890 417 / 8e-147 senescence-associated gene 12 (.1) Potri.005G089100 [exp] 279 / 3e-93 AT5G45890 405 / 1e-141 senescence-associated gene 12 (.1) Potri.005G088600 [exp] 278 / 8e-93 AT5G45890 406 / 8e-142 senescence-associated gene 12 (.1) Potri.007G076000 [exp] 277 / 9e-93 AT5G45890 407 / 2e-142 senescence-associated gene 12 (.1) Potri.007G075300 [exp] 277 / 2e-92 AT5G45890 406 / 6e-142 senescence-associated gene 12 (.1) Potri.007G076100 [exp] 277 / 2e-92 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1) Potri.007G075900 [exp] 277 / 2e-92 AT5G45890 411 / 7e-144 senescence-associated gene 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29)
Representative CDS sequence Show only first row Show all	>Lus10004781 pacid=23140483 polypeptide=Lus10004781 locus=Lus10004781.g ID=Lus10004781.BGIv1.0 annot-version=v1.0 ATGGCGGCCTTAAACAACAATGTCTTTCTCTTGGCTTCCATCTTCATTATAGGAGCCTTGGCTTCTCACGCCATGGCACGCTACACCCTTCCTGAAGCAG TCGTGCGTCTAAGGCACGAGCAATGGATGACTCGTCACGGACGAGTATACAACACTCCCGCTGAAAAGGAGACTCGCTTCCGCATTTTCAAAGACAACGT AGCATTTATCGACTCTTCCAATGCAGGGGGAAACAAGTCTTACAAGCTGGGAGTCAATCAGTTTGCGGATTTGACTAACGAGGAGTTCAAATCCACTAGG AACGGATTCAAGGGACACATGTGTTCTCCACAACATGGAACTTTCAGGGGAGAGGACCAGGGATGCAGCGGCGGGTTGATGGATGATGCGTTCAAGTTCA TCATTCAAAACAAGGGCTTGACCACCGAGACCAACTACCCTTACGACGCTGCTGATGGAACGTGTAATGCTAACAAAGAAGGAAGTAGTGCGGCTAAGAT TATGGGATACGAAGATGTGCCGGCCAACAACGAGGCAGCGTTGATGAAGGCGGTGGCAAACCAACCGATTTCTGTTGCGATTGATGCTGGAGATTCATCG TTCCAATTCTACTCTAGCGGGATCTTCACTGGAGAATGTGGAACTGAACTAGACCATGGGGTGACGGCAGTTGGGTATGGAGAGCGCGGTGGGATGAAGT ACTGGTTGGTGAAGAACTCATGGGGAGCACAGTGGGGAGAAGCCGGATACATCCGGATGCAGAGAGATGTTACTGCTAAAGAAGGTCTCTGCGGCATAGC GATGCAGGCTTCATATCCTACTGCTTAA
AA sequence Show only first row Show all	>Lus10004781 pacid=23140483 polypeptide=Lus10004781 locus=Lus10004781.g ID=Lus10004781.BGIv1.0 annot-version=v1.0 MAALNNNVFLLASIFIIGALASHAMARYTLPEAVVRLRHEQWMTRHGRVYNTPAEKETRFRIFKDNVAFIDSSNAGGNKSYKLGVNQFADLTNEEFKSTR NGFKGHMCSPQHGTFRGEDQGCSGGLMDDAFKFIIQNKGLTTETNYPYDAADGTCNANKEGSSAAKIMGYEDVPANNEAALMKAVANQPISVAIDAGDSS FQFYSSGIFTGECGTELDHGVTAVGYGERGGMKYWLVKNSWGAQWGEAGYIRMQRDVTAKEGLCGIAMQASYPTA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	1.0	0.9263
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	2.6	0.8969
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10001214 [exp]	2.8	0.8963
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	2.8	0.9093
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	3.2	0.9049
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	3.2	0.8885
					Lus10006216 [exp]	4.2	0.8897
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	5.1	0.9246
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	5.1	0.8787
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	6.9	0.8642

Compare expression of checked genes

Lus10004781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.